#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.4530 R-4 0.997274975359 E-3 0.993535538224 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.218070 R-4 0.997274975359 E-3 0.993535538224 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.224054 R-4 0.997274975359 E-3 0.993535538224 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194040 R-1 0.654673974025 E-3 0.993362733213 Q8IWV8 E3 ubiquitin-protein ligase UBR2 gi|156355437|ref|XP_001623674.1|predicted protein [Nematostella vectensis], 3e-68
other nr_hits gi|1005485134|ref|XP_015779169.1|PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR2-like [Acropora digitifera] 4e-18; gi|999968988|gb|KXJ08162.1|E3 ubiquitin-protein ligase UBR2 [Exaiptasia pallida] 3e-16; gi|1048465224|ref|XP_017512547.1|PREDICTED: E3 ubiquitin-protein ligase UBR2 isoform X5 [Manis javanica] 2e-10; gi|1048465220|ref|XP_017512545.1|PREDICTED: E3 ubiquitin-protein ligase UBR2 isoform X3 [Manis javanica] 2e-10; gi|1048465216|ref|XP_017512543.1|PREDICTED: E3 ubiquitin-protein ligase UBR2 isoform X1 [Manis javanica] 2e-10; gi|1048465222|ref|XP_017512546.1|PREDICTED: E3 ubiquitin-protein ligase UBR2 isoform X4 [Manis javanica] 2e-10; gi|1048465218|ref|XP_017512544.1|PREDICTED: E3 ubiquitin-protein ligase UBR2 isoform X2 [Manis javanica] 2e-10; gi|846985748|ref|XP_012807311.1|PREDICTED: E3 ubiquitin-protein ligase UBR2 [Jaculus jaculus] 2e-10; gi|593763558|ref|XP_007120380.1|PREDICTED: E3 ubiquitin-protein ligase UBR2 isoform X7 [Physeter catodon] 2e-10;
NvERTx.4.194044 R-1 0.654673974025 E-3 0.993362733213 No_Uniprotmatch No_Description gi|156355437|ref|XP_001623674.1|predicted protein [Nematostella vectensis], 1e-37
other nr_hits gi|1005485134|ref|XP_015779169.1|PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR2-like [Acropora digitifera] 7e-08;
NvERTx.4.150548 R-2 0.897129652461 E-3 0.993280990482 Q6RI86 Transient receptor potential cation channel subfamily A member 1 gi|999976757|gb|KXJ15931.1|Transient receptor potential cation channel subfamily A member 1 [Exaiptasia pallida], 0e+00
other nr_hits gi|1005436347|ref|XP_015755670.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X1 [Acropora digitifera] 5e-245; gi|1005436351|ref|XP_015755672.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X3 [Acropora digitifera] 4e-236; gi|1005436354|ref|XP_015755673.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X4 [Acropora digitifera] 8e-236; gi|999979376|gb|KXJ18550.1|Transient receptor potential cation channel subfamily A member 1 [Exaiptasia pallida] 8e-174; gi|1005436307|ref|XP_015755652.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X1 [Acropora digitifera] 8e-137; gi|1005436309|ref|XP_015755653.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X2 [Acropora digitifera] 8e-137; gi|1005482277|ref|XP_015777828.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like [Acropora digitifera] 5e-134; gi|999973547|gb|KXJ12721.1|Transient receptor potential cation channel subfamily A member 1 [Exaiptasia pallida] 1e-131; gi|762151937|ref|XP_011413965.1|PREDICTED: transient receptor potential cation channel subfamily A member 1 isoform X2 [Crassostrea gigas] 1e-122;
NvERTx.4.222018 R-2 0.897129652461 E-3 0.993280990482 O75762 Transient receptor potential cation channel subfamily A member 1 gi|156400752|ref|XP_001638956.1|predicted protein [Nematostella vectensis], 1e-38
other nr_hits gi|999976757|gb|KXJ15931.1|Transient receptor potential cation channel subfamily A member 1 [Exaiptasia pallida] 6e-25; gi|1005436347|ref|XP_015755670.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X1 [Acropora digitifera] 1e-21; gi|1005436351|ref|XP_015755672.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X3 [Acropora digitifera] 1e-21; gi|1005436354|ref|XP_015755673.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X4 [Acropora digitifera] 1e-21; gi|1005482277|ref|XP_015777828.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like [Acropora digitifera] 5e-16; gi|999978476|gb|KXJ17650.1|Transient receptor potential cation channel subfamily A member 1 [Exaiptasia pallida] 3e-15; gi|999979376|gb|KXJ18550.1|Transient receptor potential cation channel subfamily A member 1 [Exaiptasia pallida] 9e-13; gi|1005459716|ref|XP_015766928.1|PREDICTED: transient receptor potential cation channel subfamily A member 1-like [Acropora digitifera] 2e-11; gi|999982807|gb|KXJ21954.1|Transient receptor potential cation channel subfamily A member 1 [Exaiptasia pallida] 4e-11;
NvERTx.4.113934 R-9 0.99612458032 E-3 0.993189003007 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113935 R-9 0.99612458032 E-3 0.993189003007 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.206967 R-9 0.99612458032 E-3 0.993189003007 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.231461 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.232466 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.5826 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.12547 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.19024 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.31293 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.44805 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.44806 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.44807 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.44808 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.48613 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80683 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84170 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84655 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.89520 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90416 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90457 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.95205 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97620 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97622 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description gi|999986159|gb|KXJ25300.1|Sodium- and chloride-dependent transporter XTRP3 [Exaiptasia pallida], 3e-15
other nr_hits NA
NvERTx.4.101190 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103904 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103905 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121378 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124033 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124034 R-9 0.984831745342 E-3 0.993022555233 F2Z929_ACTVL Lipoxygenase {ECO:0000313|EMBL:BAK20442.1} gi|156323009|ref|XP_001618339.1|hypothetical protein NEMVEDRAFT_v1g233852 [Nematostella vectensis], 1e-74
other nr_hits gi|156394159|ref|XP_001636694.1|predicted protein [Nematostella vectensis] 5e-74; gi|156348306|ref|XP_001621798.1|hypothetical protein NEMVEDRAFT_v1g248632 [Nematostella vectensis] 5e-74; gi|156394157|ref|XP_001636693.1|predicted protein [Nematostella vectensis] 4e-38; gi|999990354|gb|KXJ29378.1|Allene oxide synthase-lipoxygenase protein [Exaiptasia pallida] 4e-35; gi|1005475929|ref|XP_015774730.1|PREDICTED: allene oxide synthase-lipoxygenase protein-like [Acropora digitifera] 4e-29; gi|1005494335|ref|XP_015749801.1|PREDICTED: arachidonate 5-lipoxygenase-like [Acropora digitifera] 4e-29; gi|999983062|gb|KXJ22205.1|Arachidonate 5-lipoxygenase [Exaiptasia pallida] 5e-29; gi|1005486093|ref|XP_015779645.1|PREDICTED: allene oxide synthase-lipoxygenase protein-like [Acropora digitifera] 3e-28; gi|1005458786|ref|XP_015766529.1|PREDICTED: arachidonate 5-lipoxygenase-like [Acropora digitifera] 1e-27;
NvERTx.4.124037 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description gi|156362135|ref|XP_001625636.1|predicted protein [Nematostella vectensis], 7e-82
other nr_hits gi|156392592|ref|XP_001636132.1|predicted protein [Nematostella vectensis] 7e-82; gi|156389122|ref|XP_001634841.1|predicted protein [Nematostella vectensis] 2e-80; gi|156388347|ref|XP_001634662.1|predicted protein [Nematostella vectensis] 4e-58; gi|156342199|ref|XP_001620908.1|hypothetical protein NEMVEDRAFT_v1g248742 [Nematostella vectensis] 3e-31; gi|1005495118|ref|XP_015750173.1|PREDICTED: uncharacterized protein LOC107330037 [Acropora digitifera] 1e-22; gi|1005485349|ref|XP_015779274.1|PREDICTED: uncharacterized protein LOC107357145, partial [Acropora digitifera] 1e-19; gi|1005467317|ref|XP_015770594.1|PREDICTED: uncharacterized protein LOC107349011 [Acropora digitifera] 1e-18; gi|957839973|ref|XP_014670273.1|PREDICTED: uncharacterized protein LOC106811234 [Priapulus caudatus] 7e-13; gi|156385563|ref|XP_001633699.1|predicted protein [Nematostella vectensis] 3e-12;
NvERTx.4.124040 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124043 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126169 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126170 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145078 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145085 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158727 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.164036 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166577 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.172837 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.175034 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176923 R-9 0.984831745342 E-3 0.993022555233 B3S5T9_TRIAD Putative uncharacterized protein {ECO:0000313|EMBL:EDV21957.1} gi|999981960|gb|KXJ21114.1|Ephrin type-A receptor 4a [Exaiptasia pallida], 6e-106
other nr_hits gi|196011461|ref|XP_002115594.1|hypothetical protein TRIADDRAFT_59473 [Trichoplax adhaerens] 3e-06; gi|1040672096|ref|XP_017214689.1|PREDICTED: MAM and LDL-receptor class A domain-containing protein 1-like [Danio rerio] 2e-05;
NvERTx.4.182263 R-9 0.984831745342 E-3 0.993022555233 No_Uniprotmatch No_Description None
other nr_hits NA
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