#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.9461 R-6 0.570872875571 E-2 0.999952777202 NA NA None
other nr_hits NA
NvERTx.4.13389 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.25432 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.25433 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.375 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.50650 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.80294 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.81844 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85933 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85934 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87691 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87706 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91535 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.99301 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.99308 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101688 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101689 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102894 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description gi|156371336|ref|XP_001628720.1|predicted protein [Nematostella vectensis], 5e-06
other nr_hits NA
NvERTx.4.102895 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description gi|999981874|gb|KXJ21032.1|hypothetical protein AC249_AIPGENE4347 [Exaiptasia pallida], 4e-07
other nr_hits NA
NvERTx.4.102897 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description gi|999972166|gb|KXJ11340.1|hypothetical protein AC249_AIPGENE23173 [Exaiptasia pallida], 2e-09
other nr_hits gi|999980589|gb|KXJ19763.1|hypothetical protein AC249_AIPGENE21512 [Exaiptasia pallida] 6e-09; gi|999981874|gb|KXJ21032.1|hypothetical protein AC249_AIPGENE4347 [Exaiptasia pallida] 2e-08; gi|999990416|gb|KXJ29440.1|hypothetical protein AC249_AIPGENE27043 [Exaiptasia pallida] 1e-06;
NvERTx.4.102898 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description gi|999972166|gb|KXJ11340.1|hypothetical protein AC249_AIPGENE23173 [Exaiptasia pallida], 1e-09
other nr_hits gi|999980589|gb|KXJ19763.1|hypothetical protein AC249_AIPGENE21512 [Exaiptasia pallida] 1e-08; gi|999981874|gb|KXJ21032.1|hypothetical protein AC249_AIPGENE4347 [Exaiptasia pallida] 7e-08; gi|999990416|gb|KXJ29440.1|hypothetical protein AC249_AIPGENE27043 [Exaiptasia pallida] 2e-06;
NvERTx.4.102900 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102901 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description gi|999981874|gb|KXJ21032.1|hypothetical protein AC249_AIPGENE4347 [Exaiptasia pallida], 7e-08
other nr_hits NA
NvERTx.4.102902 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description gi|999981874|gb|KXJ21032.1|hypothetical protein AC249_AIPGENE4347 [Exaiptasia pallida], 4e-08
other nr_hits NA
NvERTx.4.102903 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description gi|999981874|gb|KXJ21032.1|hypothetical protein AC249_AIPGENE4347 [Exaiptasia pallida], 3e-08
other nr_hits NA
NvERTx.4.103011 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.110809 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.110826 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.110827 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.110823 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.110784 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112824 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113632 R-6 0.570872875571 E-2 0.999952777202 Q68FD7 Folliculin-interacting protein 1 gi|156371336|ref|XP_001628720.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999979196|gb|KXJ18370.1|Folliculin-interacting protein 1 [Exaiptasia pallida] 3e-141; gi|1005420381|ref|XP_015756937.1|PREDICTED: folliculin-interacting protein 1-like [Acropora digitifera] 4e-97; gi|1126211510|ref|XP_019639551.1|PREDICTED: folliculin-interacting protein 2-like [Branchiostoma belcheri] 5e-96; gi|260802692|ref|XP_002596226.1|hypothetical protein BRAFLDRAFT_117992 [Branchiostoma floridae] 1e-94; gi|1041104660|ref|XP_017275423.1|PREDICTED: folliculin-interacting protein 1 isoform X3 [Kryptolebias marmoratus] 5e-86; gi|1108891346|ref|XP_010731772.2|PREDICTED: folliculin-interacting protein 1 isoform X3 [Larimichthys crocea] 4e-85; gi|1079755141|ref|XP_018547352.1|PREDICTED: folliculin-interacting protein 1 isoform X3 [Lates calcarifer] 5e-85; gi|742217372|ref|XP_010861873.1|PREDICTED: folliculin-interacting protein 1 isoform X2 [Bison bison bison] 7e-85; gi|657570862|ref|XP_008288973.1|PREDICTED: folliculin-interacting protein 1 isoform X3 [Stegastes partitus] 7e-85;
NvERTx.4.113634 R-6 0.570872875571 E-2 0.999952777202 Q8TF40 Folliculin-interacting protein 1 gi|156371336|ref|XP_001628720.1|predicted protein [Nematostella vectensis], 2e-38
other nr_hits gi|999979196|gb|KXJ18370.1|Folliculin-interacting protein 1 [Exaiptasia pallida] 8e-27; gi|443714904|gb|ELU07102.1|hypothetical protein CAPTEDRAFT_96149, partial [Capitella teleta] 3e-13; gi|1005492572|ref|XP_015748956.1|PREDICTED: folliculin-interacting protein 1-like, partial [Acropora digitifera] 4e-13; gi|1005420381|ref|XP_015756937.1|PREDICTED: folliculin-interacting protein 1-like [Acropora digitifera] 4e-13; gi|260802692|ref|XP_002596226.1|hypothetical protein BRAFLDRAFT_117992 [Branchiostoma floridae] 9e-13; gi|1126211510|ref|XP_019639551.1|PREDICTED: folliculin-interacting protein 2-like [Branchiostoma belcheri] 1e-12; gi|852788732|ref|XP_012885303.1|PREDICTED: folliculin-interacting protein 2 [Dipodomys ordii] 3e-12; gi|1147354595|ref|XP_020029257.1|LOW QUALITY PROTEIN: folliculin-interacting protein 2 [Castor canadensis] 5e-12; gi|1139441223|gb|JAV44656.1|folliculin-interacting protein 2 [Castor canadensis] 5e-12;
NvERTx.4.113635 R-6 0.570872875571 E-2 0.999952777202 Q68FD7 Folliculin-interacting protein 1 gi|156371336|ref|XP_001628720.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999979196|gb|KXJ18370.1|Folliculin-interacting protein 1 [Exaiptasia pallida] 3e-141; gi|1005420381|ref|XP_015756937.1|PREDICTED: folliculin-interacting protein 1-like [Acropora digitifera] 4e-97; gi|1126211510|ref|XP_019639551.1|PREDICTED: folliculin-interacting protein 2-like [Branchiostoma belcheri] 5e-96; gi|260802692|ref|XP_002596226.1|hypothetical protein BRAFLDRAFT_117992 [Branchiostoma floridae] 1e-94; gi|1041104660|ref|XP_017275423.1|PREDICTED: folliculin-interacting protein 1 isoform X3 [Kryptolebias marmoratus] 5e-86; gi|1108891346|ref|XP_010731772.2|PREDICTED: folliculin-interacting protein 1 isoform X3 [Larimichthys crocea] 4e-85; gi|1079755141|ref|XP_018547352.1|PREDICTED: folliculin-interacting protein 1 isoform X3 [Lates calcarifer] 5e-85; gi|742217372|ref|XP_010861873.1|PREDICTED: folliculin-interacting protein 1 isoform X2 [Bison bison bison] 7e-85; gi|657570862|ref|XP_008288973.1|PREDICTED: folliculin-interacting protein 1 isoform X3 [Stegastes partitus] 7e-85;
NvERTx.4.113637 R-6 0.570872875571 E-2 0.999952777202 Q5W4S4 Folliculin-interacting protein 1 gi|156371336|ref|XP_001628720.1|predicted protein [Nematostella vectensis], 5e-172
other nr_hits gi|1126211510|ref|XP_019639551.1|PREDICTED: folliculin-interacting protein 2-like [Branchiostoma belcheri] 5e-53; gi|260802692|ref|XP_002596226.1|hypothetical protein BRAFLDRAFT_117992 [Branchiostoma floridae] 1e-52; gi|291241718|ref|XP_002740758.1|PREDICTED: folliculin-interacting protein 2-like [Saccoglossus kowalevskii] 1e-49; gi|871229164|ref|XP_012937332.1|PREDICTED: folliculin-interacting protein 2-like isoform X1 [Aplysia californica] 3e-48; gi|871229172|ref|XP_012937334.1|PREDICTED: folliculin-interacting protein 2-like isoform X3 [Aplysia californica] 3e-48; gi|524881264|ref|XP_005097286.1|PREDICTED: folliculin-interacting protein 1-like isoform X2 [Aplysia californica] 3e-48; gi|919100466|ref|XP_013386631.1|PREDICTED: folliculin-interacting protein 1-like isoform X1 [Lingula anatina] 6e-48; gi|919100469|ref|XP_013386632.1|PREDICTED: folliculin-interacting protein 1-like isoform X2 [Lingula anatina] 6e-48; gi|908457234|ref|XP_013084191.1|PREDICTED: folliculin-interacting protein 2-like isoform X1 [Biomphalaria glabrata] 9e-47;
NvERTx.4.113638 R-6 0.570872875571 E-2 0.999952777202 Q8TF40 Folliculin-interacting protein 1 gi|156371336|ref|XP_001628720.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999979196|gb|KXJ18370.1|Folliculin-interacting protein 1 [Exaiptasia pallida] 3e-142; gi|1005420381|ref|XP_015756937.1|PREDICTED: folliculin-interacting protein 1-like [Acropora digitifera] 1e-91; gi|1005492572|ref|XP_015748956.1|PREDICTED: folliculin-interacting protein 1-like, partial [Acropora digitifera] 3e-89; gi|675371440|gb|KFM64342.1|Folliculin-interacting protein 2, partial [Stegodyphus mimosarum] 1e-46; gi|961106016|ref|XP_014777166.1|PREDICTED: folliculin-interacting protein 1-like isoform X2 [Octopus bimaculoides] 3e-46; gi|961106013|ref|XP_014777165.1|PREDICTED: folliculin-interacting protein 1-like isoform X1 [Octopus bimaculoides] 3e-46; gi|828216942|ref|XP_012560495.1|PREDICTED: folliculin-interacting protein 1-like [Hydra vulgaris] 1e-40; gi|835957482|ref|XP_012777483.1|PREDICTED: folliculin-interacting protein 1 isoform X2 [Maylandia zebra] 1e-35; gi|499022073|ref|XP_004561808.1|PREDICTED: folliculin-interacting protein 1 isoform X1 [Maylandia zebra] 1e-35;
NvERTx.4.113639 R-6 0.570872875571 E-2 0.999952777202 Q68FD7 Folliculin-interacting protein 1 gi|156371336|ref|XP_001628720.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999979196|gb|KXJ18370.1|Folliculin-interacting protein 1 [Exaiptasia pallida] 3e-141; gi|1005420381|ref|XP_015756937.1|PREDICTED: folliculin-interacting protein 1-like [Acropora digitifera] 4e-97; gi|1126211510|ref|XP_019639551.1|PREDICTED: folliculin-interacting protein 2-like [Branchiostoma belcheri] 5e-96; gi|260802692|ref|XP_002596226.1|hypothetical protein BRAFLDRAFT_117992 [Branchiostoma floridae] 1e-94; gi|1041104660|ref|XP_017275423.1|PREDICTED: folliculin-interacting protein 1 isoform X3 [Kryptolebias marmoratus] 5e-86; gi|1108891346|ref|XP_010731772.2|PREDICTED: folliculin-interacting protein 1 isoform X3 [Larimichthys crocea] 4e-85; gi|1079755141|ref|XP_018547352.1|PREDICTED: folliculin-interacting protein 1 isoform X3 [Lates calcarifer] 5e-85; gi|742217372|ref|XP_010861873.1|PREDICTED: folliculin-interacting protein 1 isoform X2 [Bison bison bison] 7e-85; gi|657570862|ref|XP_008288973.1|PREDICTED: folliculin-interacting protein 1 isoform X3 [Stegastes partitus] 7e-85;
NvERTx.4.113641 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.120405 R-6 0.570872875571 E-2 0.999952777202 Q4SBY6 Histamine N-methyltransferase gi|156351058|ref|XP_001622343.1|predicted protein [Nematostella vectensis], 7e-17
other nr_hits gi|999966583|gb|KXJ05757.1|Histamine N-methyltransferase, partial [Exaiptasia pallida] 9e-17; gi|999973116|gb|KXJ12290.1|Histamine N-methyltransferase A [Exaiptasia pallida] 6e-15; gi|1005455730|ref|XP_015764997.1|PREDICTED: histamine N-methyltransferase-like [Acropora digitifera] 8e-15; gi|999984262|gb|KXJ23403.1|Histamine N-methyltransferase B [Exaiptasia pallida] 4e-14; gi|999970676|gb|KXJ09850.1|Histamine N-methyltransferase [Exaiptasia pallida] 5e-14; gi|1005454970|ref|XP_015764627.1|PREDICTED: histamine N-methyltransferase-like [Acropora digitifera] 9e-14; gi|1005455732|ref|XP_015764998.1|PREDICTED: histamine N-methyltransferase-like [Acropora digitifera] 1e-13; gi|999975442|gb|KXJ14616.1|Histamine N-methyltransferase [Exaiptasia pallida] 1e-13; gi|999973111|gb|KXJ12285.1|Histamine N-methyltransferase A [Exaiptasia pallida] 1e-13;
NvERTx.4.121575 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121110 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121111 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.127334 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.127587 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130903 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137199 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137424 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140302 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.142006 R-6 0.570872875571 E-2 0.999952777202 No_Uniprotmatch No_Description None
other nr_hits NA
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