#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.87667 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description gi|156375419|ref|XP_001630078.1|predicted protein [Nematostella vectensis], 5e-44
other nr_hits gi|999987484|gb|KXJ26599.1|Protein tweety-like 2 [Exaiptasia pallida] 1e-06;
NvERTx.4.87669 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description gi|156375419|ref|XP_001630078.1|predicted protein [Nematostella vectensis], 3e-46
other nr_hits gi|999987484|gb|KXJ26599.1|Protein tweety-like 2 [Exaiptasia pallida] 2e-08;
NvERTx.4.87670 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87664 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87665 R-1 0.601742805758 E-2 0.999995697052 Q6GPA5 Protein tweety homolog 3 gi|156375419|ref|XP_001630078.1|predicted protein [Nematostella vectensis], 6e-264
other nr_hits gi|999987484|gb|KXJ26599.1|Protein tweety-like 2 [Exaiptasia pallida] 3e-78; gi|828220455|ref|XP_002158104.3|PREDICTED: protein tweety homolog 2-like [Hydra vulgaris] 5e-27; gi|395514771|ref|XP_003761586.1|PREDICTED: protein tweety homolog 3 [Sarcophilus harrisii] 5e-27; gi|1050361920|gb|OCT64125.1|hypothetical protein XELAEV_18045226mg [Xenopus laevis] 1e-26; gi|187608410|ref|NP_001120249.1|protein tweety homolog 3 [Xenopus tropicalis] 4e-26; gi|908537002|ref|XP_013129798.1|PREDICTED: protein tweety homolog 2-like isoform X2 [Oreochromis niloticus] 4e-26; gi|908536997|ref|XP_013129797.1|PREDICTED: protein tweety homolog 2-like isoform X1 [Oreochromis niloticus] 4e-26; gi|1043410123|gb|OCA22757.1|hypothetical protein XENTR_v90023585mg [Xenopus tropicalis] 6e-26; gi|1083279831|ref|XP_018588271.1|PREDICTED: protein tweety homolog 3 [Scleropages formosus] 9e-26;
NvERTx.4.87673 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87678 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103771 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.103774 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194604 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194608 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description gi|156375419|ref|XP_001630078.1|predicted protein [Nematostella vectensis], 5e-16
other nr_hits NA
NvERTx.4.4649 R-1 0.601742805758 E-2 0.999995697052 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.21955 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description gi|999981731|gb|KXJ20905.1|Serine/threonine-protein kinase BRSK2 [Exaiptasia pallida], 9e-18
other nr_hits gi|1005441711|ref|XP_015758180.1|PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase BRSK2-like [Acropora digitifera] 5e-13;
NvERTx.4.21956 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.24488 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71207 R-6 0.989853606585 E-2 0.999995597886 NA NA None
other nr_hits NA
NvERTx.4.79047 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.94547 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.99787 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.99788 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105766 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105769 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description gi|999987382|gb|KXJ26499.1|hypothetical protein AC249_AIPGENE15475 [Exaiptasia pallida], 3e-06
other nr_hits NA
NvERTx.4.105771 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106913 R-6 0.989853606585 E-2 0.999995597886 Q8IWQ3 Serine/threonine-protein kinase BRSK2 gi|999981731|gb|KXJ20905.1|Serine/threonine-protein kinase BRSK2 [Exaiptasia pallida], 1e-56
other nr_hits gi|1005441711|ref|XP_015758180.1|PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase BRSK2-like [Acropora digitifera] 2e-46; gi|1126197484|ref|XP_019631925.1|PREDICTED: serine/threonine-protein kinase BRSK2-like [Branchiostoma belcheri] 2e-25; gi|260826618|ref|XP_002608262.1|hypothetical protein BRAFLDRAFT_87940 [Branchiostoma floridae] 2e-25; gi|585652258|ref|XP_006814890.1|PREDICTED: serine/threonine-protein kinase BRSK2-like [Saccoglossus kowalevskii] 1e-24; gi|483512967|gb|EOB01236.1|BR serine/threonine-protein kinase 2, partial [Anas platyrhynchos] 1e-24; gi|1041122637|ref|XP_017285297.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X8 [Kryptolebias marmoratus] 1e-23; gi|1129891524|ref|XP_019751564.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X8 [Hippocampus comes] 2e-23; gi|1020526921|ref|XP_016103069.1|PREDICTED: serine/threonine-protein kinase BRSK2-like [Sinocyclocheilus grahami] 2e-23; gi|1009588291|ref|XP_015923409.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X2 [Parasteatoda tepidariorum] 2e-23;
NvERTx.4.106922 R-6 0.989853606585 E-2 0.999995597886 B2DD29 Serine/threonine-protein kinase BRSK1 gi|999981731|gb|KXJ20905.1|Serine/threonine-protein kinase BRSK2 [Exaiptasia pallida], 2e-88
other nr_hits gi|1005441711|ref|XP_015758180.1|PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase BRSK2-like [Acropora digitifera] 2e-80; gi|844846460|ref|XP_012794597.1|Serine/threonine kinase SAD-1 [Schistosoma haematobium] 2e-69; gi|1084296601|ref|XP_018651398.1|serine/threonine kinase [Schistosoma mansoni] 2e-69; gi|1084296603|ref|XP_018651399.1|serine/threonine kinase [Schistosoma mansoni] 2e-69; gi|1005961387|ref|XP_015788994.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X1 [Tetranychus urticae] 6e-68; gi|1005961389|ref|XP_015788995.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X2 [Tetranychus urticae] 6e-68; gi|779989465|ref|XP_011666997.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X2 [Strongylocentrotus purpuratus] 8e-68; gi|779989470|ref|XP_011667004.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X3 [Strongylocentrotus purpuratus] 8e-68; gi|390337856|ref|XP_003724657.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X1 [Strongylocentrotus purpuratus] 8e-68;
NvERTx.4.106914 R-6 0.989853606585 E-2 0.999995597886 Q69Z98 Serine/threonine-protein kinase BRSK2 gi|999981731|gb|KXJ20905.1|Serine/threonine-protein kinase BRSK2 [Exaiptasia pallida], 3e-136
other nr_hits gi|1005441711|ref|XP_015758180.1|PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase BRSK2-like [Acropora digitifera] 9e-122; gi|961071314|ref|XP_014778542.1|PREDICTED: serine/threonine-protein kinase BRSK2-like [Octopus bimaculoides] 1e-111; gi|939628264|ref|XP_014270612.1|PREDICTED: serine/threonine-protein kinase BRSK2 [Halyomorpha halys] 1e-111; gi|1006097586|gb|JAQ03094.1|Serine/threonine-protein kinase BRSK2, partial [Lygus hesperus] 2e-111; gi|844846460|ref|XP_012794597.1|Serine/threonine kinase SAD-1 [Schistosoma haematobium] 2e-111; gi|939262854|ref|XP_014251369.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X1 [Cimex lectularius] 2e-111; gi|939262858|ref|XP_014251371.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X3 [Cimex lectularius] 2e-111; gi|939262856|ref|XP_014251370.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X2 [Cimex lectularius] 2e-111; gi|1005961387|ref|XP_015788994.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X1 [Tetranychus urticae] 4e-111;
NvERTx.4.106915 R-6 0.989853606585 E-2 0.999995597886 Q69Z98 Serine/threonine-protein kinase BRSK2 gi|999981731|gb|KXJ20905.1|Serine/threonine-protein kinase BRSK2 [Exaiptasia pallida], 5e-131
other nr_hits gi|1005441711|ref|XP_015758180.1|PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase BRSK2-like [Acropora digitifera] 2e-100; gi|483512967|gb|EOB01236.1|BR serine/threonine-protein kinase 2, partial [Anas platyrhynchos] 2e-58; gi|1040682667|ref|XP_017209743.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X6 [Danio rerio] 7e-57; gi|699685288|ref|XP_009903777.1|PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase BRSK2 [Picoides pubescens] 1e-56; gi|676767113|gb|KFO96725.1|Serine/threonine-protein kinase BRSK2, partial [Calypte anna] 1e-56; gi|449280804|gb|EMC88029.1|BR serine/threonine-protein kinase 2, partial [Columba livia] 1e-56; gi|1121898414|ref|XP_019522895.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X7 [Hipposideros armiger] 2e-56; gi|1121912273|ref|XP_019407720.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X4 [Crocodylus porosus] 2e-56; gi|1011566531|gb|KYO22181.1|hypothetical protein Y1Q_0000768 [Alligator mississippiensis] 2e-56;
NvERTx.4.106916 R-6 0.989853606585 E-2 0.999995597886 Q69Z98 Serine/threonine-protein kinase BRSK2 gi|999981731|gb|KXJ20905.1|Serine/threonine-protein kinase BRSK2 [Exaiptasia pallida], 1e-289
other nr_hits gi|1005441711|ref|XP_015758180.1|PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase BRSK2-like [Acropora digitifera] 1e-233; gi|542239872|ref|XP_005457449.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X4 [Oreochromis niloticus] 3e-179; gi|973213991|ref|XP_015193658.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X9 [Lepisosteus oculatus] 4e-179; gi|499042561|ref|XP_004571888.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X7 [Maylandia zebra] 5e-179; gi|973213987|ref|XP_006642500.2|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X7 [Lepisosteus oculatus] 1e-178; gi|542239874|ref|XP_003452654.2|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X5 [Oreochromis niloticus] 1e-178; gi|1121912273|ref|XP_019407720.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X4 [Crocodylus porosus] 2e-178; gi|1113796714|ref|XP_019332714.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X9 [Alligator mississippiensis] 2e-178; gi|944345673|ref|XP_014376922.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X10 [Alligator sinensis] 2e-178;
NvERTx.4.106917 R-6 0.989853606585 E-2 0.999995597886 Q8IWQ3 Serine/threonine-protein kinase BRSK2 gi|999981731|gb|KXJ20905.1|Serine/threonine-protein kinase BRSK2 [Exaiptasia pallida], 2e-86
other nr_hits gi|1005441711|ref|XP_015758180.1|PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase BRSK2-like [Acropora digitifera] 3e-65; gi|1126197484|ref|XP_019631925.1|PREDICTED: serine/threonine-protein kinase BRSK2-like [Branchiostoma belcheri] 7e-34; gi|260826618|ref|XP_002608262.1|hypothetical protein BRAFLDRAFT_87940 [Branchiostoma floridae] 7e-34; gi|483512967|gb|EOB01236.1|BR serine/threonine-protein kinase 2, partial [Anas platyrhynchos] 2e-33; gi|1129891524|ref|XP_019751564.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X8 [Hippocampus comes] 8e-33; gi|1040682667|ref|XP_017209743.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X6 [Danio rerio] 8e-33; gi|1040682669|ref|XP_017209744.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X7 [Danio rerio] 8e-33; gi|926621572|ref|XP_013776129.1|PREDICTED: serine/threonine-protein kinase BRSK2-like [Limulus polyphemus] 8e-33; gi|499042561|ref|XP_004571888.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X7 [Maylandia zebra] 1e-32;
NvERTx.4.106919 R-6 0.989853606585 E-2 0.999995597886 Q69Z98 Serine/threonine-protein kinase BRSK2 gi|999981731|gb|KXJ20905.1|Serine/threonine-protein kinase BRSK2 [Exaiptasia pallida], 1e-214
other nr_hits gi|1005441711|ref|XP_015758180.1|PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase BRSK2-like [Acropora digitifera] 5e-179; gi|1005961387|ref|XP_015788994.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X1 [Tetranychus urticae] 6e-148; gi|1005961389|ref|XP_015788995.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X2 [Tetranychus urticae] 6e-148; gi|1041122637|ref|XP_017285297.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X8 [Kryptolebias marmoratus] 6e-146; gi|499042561|ref|XP_004571888.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X7 [Maylandia zebra] 9e-146; gi|1079757156|ref|XP_018548420.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X4 [Lates calcarifer] 2e-145; gi|542239872|ref|XP_005457449.1|PREDICTED: serine/threonine-protein kinase BRSK2 isoform X4 [Oreochromis niloticus] 2e-145; gi|1041122639|ref|XP_017285298.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X9 [Kryptolebias marmoratus] 3e-145; gi|1129891524|ref|XP_019751564.1|PREDICTED: serine/threonine-protein kinase BRSK2-like isoform X8 [Hippocampus comes] 5e-145;
NvERTx.4.106920 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106921 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106929 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112522 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123443 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124992 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125000 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125002 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141701 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158150 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158151 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158152 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.164341 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166205 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.172447 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.175615 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description gi|999967857|gb|KXJ07031.1|hypothetical protein AC249_AIPGENE22873 [Exaiptasia pallida], 1e-23
other nr_hits gi|999977423|gb|KXJ16597.1|Protein arginine N-methyltransferase 8-B [Exaiptasia pallida] 2e-21; gi|999969854|gb|KXJ09028.1|hypothetical protein AC249_AIPGENE10063 [Exaiptasia pallida] 2e-21; gi|999976258|gb|KXJ15432.1|hypothetical protein AC249_AIPGENE10232 [Exaiptasia pallida] 2e-18; gi|999974356|gb|KXJ13530.1|hypothetical protein AC249_AIPGENE25365 [Exaiptasia pallida] 7e-18; gi|999969118|gb|KXJ08292.1|hypothetical protein AC249_AIPGENE6836 [Exaiptasia pallida] 4e-14;
NvERTx.4.187196 R-6 0.989853606585 E-2 0.999995597886 A0A147AKU3_FUNHE Uncharacterized protein {ECO:0000313|EMBL:JAR79133.1} gi|1005453493|ref|XP_015763902.1|PREDICTED: uncharacterized protein LOC107342907 [Acropora digitifera], 2e-68
other nr_hits gi|999965887|gb|KXJ05065.1|hypothetical protein AC249_AIPGENE8421, partial [Exaiptasia pallida] 5e-55; gi|1005444145|ref|XP_015759403.1|PREDICTED: uncharacterized protein LOC107338686 [Acropora digitifera] 2e-54; gi|780042594|ref|XP_011668309.1|PREDICTED: uncharacterized protein LOC105440160 [Strongylocentrotus purpuratus] 9e-49; gi|780019577|ref|XP_011664927.1|PREDICTED: uncharacterized protein LOC105438608 [Strongylocentrotus purpuratus] 9e-49; gi|780069146|ref|XP_011671346.1|PREDICTED: uncharacterized protein LOC105441676 [Strongylocentrotus purpuratus] 9e-49; gi|1005451757|ref|XP_015763031.1|PREDICTED: uncharacterized protein LOC107342089 [Acropora digitifera] 1e-45; gi|1005444099|ref|XP_015759381.1|PREDICTED: uncharacterized protein LOC107338660 [Acropora digitifera] 6e-42; gi|688605922|ref|XP_009293773.1|PREDICTED: uncharacterized protein LOC101883290 isoform X2 [Danio rerio] 5e-41; gi|528513985|ref|XP_005161423.1|PREDICTED: uncharacterized protein LOC101883290 isoform X1 [Danio rerio] 5e-41;
NvERTx.4.196034 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200848 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.200835 R-6 0.989853606585 E-2 0.999995597886 No_Uniprotmatch No_Description None
other nr_hits NA
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