#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.127649 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.128694 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.128695 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131882 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131876 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131880 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139031 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description gi|999970911|gb|KXJ10085.1|putative ATP-dependent RNA helicase DDX46 [Exaiptasia pallida], 2e-12
other nr_hits gi|999970032|gb|KXJ09206.1|hypothetical protein AC249_AIPGENE14195 [Exaiptasia pallida] 2e-11; gi|999981099|gb|KXJ20273.1|hypothetical protein AC249_AIPGENE16562 [Exaiptasia pallida] 2e-08; gi|999979042|gb|KXJ18216.1|hypothetical protein AC249_AIPGENE20395 [Exaiptasia pallida] 7e-08; gi|1005428542|ref|XP_015751998.1|PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107331854 [Acropora digitifera] 3e-07; gi|156364639|ref|XP_001626454.1|predicted protein [Nematostella vectensis] 2e-06; gi|156401266|ref|XP_001639212.1|predicted protein [Nematostella vectensis] 2e-06;
NvERTx.4.144671 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144694 R-3 0.311920920163 E-2 0.999999440693 Q54KA7 Ankyrin repeat, PH and SEC7 domain containing protein secG gi|999982264|gb|KXJ21414.1|Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Exaiptasia pallida], 6e-155
other nr_hits gi|1005437698|ref|XP_015756282.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like [Acropora digitifera] 9e-122; gi|919060774|ref|XP_013412073.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Lingula anatina] 2e-80; gi|871246794|ref|XP_005102921.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Aplysia californica] 4e-71; gi|459173411|ref|XP_004225669.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Ciona intestinalis] 4e-63; gi|761900765|ref|XP_011409968.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Amphimedon queenslandica] 5e-57; gi|762112930|ref|XP_011439211.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A [Crassostrea gigas] 5e-53; gi|390356652|ref|XP_789713.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1 [Strongylocentrotus purpuratus] 6e-47; gi|1126199403|ref|XP_019632965.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Branchiostoma belcheri] 4e-46; gi|908466953|ref|XP_013087234.1|PREDICTED: homeobox protein Wariai-like, partial [Biomphalaria glabrata] 8e-44;
NvERTx.4.144674 R-3 0.311920920163 E-2 0.999999440693 Q54KA7 Ankyrin repeat, PH and SEC7 domain containing protein secG gi|999982264|gb|KXJ21414.1|Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Exaiptasia pallida], 6e-155
other nr_hits gi|1005437698|ref|XP_015756282.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like [Acropora digitifera] 9e-122; gi|919060774|ref|XP_013412073.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Lingula anatina] 2e-80; gi|871246794|ref|XP_005102921.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Aplysia californica] 4e-71; gi|459173411|ref|XP_004225669.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Ciona intestinalis] 4e-63; gi|761900765|ref|XP_011409968.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Amphimedon queenslandica] 5e-57; gi|762112930|ref|XP_011439211.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A [Crassostrea gigas] 5e-53; gi|390356652|ref|XP_789713.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1 [Strongylocentrotus purpuratus] 6e-47; gi|1126199403|ref|XP_019632965.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Branchiostoma belcheri] 4e-46; gi|908466953|ref|XP_013087234.1|PREDICTED: homeobox protein Wariai-like, partial [Biomphalaria glabrata] 8e-44;
NvERTx.4.144675 R-3 0.311920920163 E-2 0.999999440693 Q54KA7 Ankyrin repeat, PH and SEC7 domain containing protein secG gi|999982264|gb|KXJ21414.1|Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Exaiptasia pallida], 6e-155
other nr_hits gi|1005437698|ref|XP_015756282.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like [Acropora digitifera] 9e-122; gi|919060774|ref|XP_013412073.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Lingula anatina] 2e-80; gi|871246794|ref|XP_005102921.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Aplysia californica] 4e-71; gi|459173411|ref|XP_004225669.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Ciona intestinalis] 4e-63; gi|761900765|ref|XP_011409968.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Amphimedon queenslandica] 5e-57; gi|762112930|ref|XP_011439211.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A [Crassostrea gigas] 5e-53; gi|390356652|ref|XP_789713.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1 [Strongylocentrotus purpuratus] 6e-47; gi|1126199403|ref|XP_019632965.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Branchiostoma belcheri] 4e-46; gi|908466953|ref|XP_013087234.1|PREDICTED: homeobox protein Wariai-like, partial [Biomphalaria glabrata] 8e-44;
NvERTx.4.144679 R-3 0.311920920163 E-2 0.999999440693 Q54KA7 Ankyrin repeat, PH and SEC7 domain containing protein secG gi|999982264|gb|KXJ21414.1|Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Exaiptasia pallida], 6e-155
other nr_hits gi|1005437698|ref|XP_015756282.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like [Acropora digitifera] 9e-122; gi|919060774|ref|XP_013412073.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Lingula anatina] 2e-80; gi|871246794|ref|XP_005102921.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Aplysia californica] 4e-71; gi|459173411|ref|XP_004225669.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Ciona intestinalis] 4e-63; gi|761900765|ref|XP_011409968.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Amphimedon queenslandica] 5e-57; gi|762112930|ref|XP_011439211.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A [Crassostrea gigas] 5e-53; gi|390356652|ref|XP_789713.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1 [Strongylocentrotus purpuratus] 6e-47; gi|1126199403|ref|XP_019632965.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Branchiostoma belcheri] 4e-46; gi|908466953|ref|XP_013087234.1|PREDICTED: homeobox protein Wariai-like, partial [Biomphalaria glabrata] 8e-44;
NvERTx.4.144682 R-3 0.311920920163 E-2 0.999999440693 Q54KA7 Ankyrin repeat, PH and SEC7 domain containing protein secG gi|999982264|gb|KXJ21414.1|Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Exaiptasia pallida], 6e-155
other nr_hits gi|1005437698|ref|XP_015756282.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like [Acropora digitifera] 9e-122; gi|919060774|ref|XP_013412073.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Lingula anatina] 2e-80; gi|871246794|ref|XP_005102921.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Aplysia californica] 4e-71; gi|459173411|ref|XP_004225669.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Ciona intestinalis] 4e-63; gi|761900765|ref|XP_011409968.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Amphimedon queenslandica] 5e-57; gi|762112930|ref|XP_011439211.1|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A [Crassostrea gigas] 5e-53; gi|390356652|ref|XP_789713.2|PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1 [Strongylocentrotus purpuratus] 6e-47; gi|1126199403|ref|XP_019632965.1|PREDICTED: ankyrin repeat domain-containing protein 42-like [Branchiostoma belcheri] 4e-46; gi|908466953|ref|XP_013087234.1|PREDICTED: homeobox protein Wariai-like, partial [Biomphalaria glabrata] 8e-44;
NvERTx.4.153356 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154941 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154943 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154945 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.154948 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156619 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156621 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156622 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158530 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158531 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158532 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158939 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166442 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181549 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181550 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181551 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.187060 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198553 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198811 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.198812 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203342 R-3 0.311920920163 E-2 0.999999440693 Q28509 Beta-2 adrenergic receptor gi|156405348|ref|XP_001640694.1|predicted protein [Nematostella vectensis], 3e-79
other nr_hits gi|156348605|ref|XP_001621911.1|hypothetical protein NEMVEDRAFT_v1g221423 [Nematostella vectensis] 2e-32; gi|999980717|gb|KXJ19891.1|Trace amine-associated receptor 9 [Exaiptasia pallida] 2e-30; gi|156408399|ref|XP_001641844.1|predicted protein [Nematostella vectensis] 5e-25; gi|1005455541|ref|XP_015764900.1|PREDICTED: trace amine-associated receptor 2-like [Acropora digitifera] 3e-20; gi|1005472468|ref|XP_015773099.1|PREDICTED: adenosine receptor A1-like [Acropora digitifera] 8e-20; gi|1005455543|ref|XP_015764901.1|PREDICTED: adenosine receptor A2a-like [Acropora digitifera] 2e-19; gi|1005461202|ref|XP_015767687.1|PREDICTED: adrenocorticotropic hormone receptor-like [Acropora digitifera] 2e-19; gi|156393975|ref|XP_001636602.1|predicted protein [Nematostella vectensis] 7e-19; gi|1005440555|ref|XP_015757616.1|PREDICTED: adenosine receptor A3-like [Acropora digitifera] 2e-18;
NvERTx.4.203345 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203348 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203349 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203358 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204728 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204729 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204730 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204731 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204732 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204733 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204734 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204735 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.205613 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.205614 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.205615 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.205621 R-3 0.311920920163 E-2 0.999999440693 No_Uniprotmatch No_Description None
other nr_hits NA
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