#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.146728 R-5 0.550000268558 E-2 0.999999822139 Q61555 Fibrillin-2 gi|156373058|ref|XP_001629351.1|predicted protein [Nematostella vectensis], 3e-64
other nr_hits gi|1126181165|ref|XP_019623052.1|PREDICTED: fibrillin-2-like [Branchiostoma belcheri] 1e-59; gi|1087806539|ref|XP_018671378.1|PREDICTED: fibrillin-2-like [Ciona intestinalis] 4e-57; gi|1126172537|ref|XP_019618362.1|PREDICTED: fibrillin-2-like isoform X26 [Branchiostoma belcheri] 5e-56; gi|1126172523|ref|XP_019618354.1|PREDICTED: fibrillin-2-like isoform X19 [Branchiostoma belcheri] 2e-55; gi|1126172573|ref|XP_019618382.1|PREDICTED: fibrillin-2-like isoform X44 [Branchiostoma belcheri] 3e-55; gi|1126172533|ref|XP_019618360.1|PREDICTED: fibrillin-2-like isoform X24 [Branchiostoma belcheri] 3e-55; gi|1087827459|ref|XP_018668140.1|PREDICTED: fibrillin-1-like isoform X2 [Ciona intestinalis] 3e-55; gi|1126172521|ref|XP_019618353.1|PREDICTED: fibrillin-2-like isoform X18 [Branchiostoma belcheri] 4e-55; gi|1126172499|ref|XP_019618341.1|PREDICTED: fibrillin-2-like isoform X7 [Branchiostoma belcheri] 5e-55;
NvERTx.4.5872 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.9731 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.42741 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.88442 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92908 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92916 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.116770 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126729 R-4 0.997814181056 E-2 0.999999816205 Q2PZL6 Protocadherin Fat 4 gi|828205262|ref|XP_012556552.1|PREDICTED: protocadherin Fat 4-like [Hydra vulgaris], 0e+00
other nr_hits gi|999983525|gb|KXJ22666.1|Protocadherin Fat 4 [Exaiptasia pallida] 0e+00; gi|1005447112|ref|XP_015760844.1|PREDICTED: cadherin-23-like [Acropora digitifera] 0e+00; gi|1139806452|ref|XP_019923887.1|PREDICTED: protocadherin Fat 4 [Crassostrea gigas] 0e+00; gi|908458925|ref|XP_013084736.1|PREDICTED: protocadherin Fat 4-like [Biomphalaria glabrata] 1e-307; gi|405963723|gb|EKC29278.1|Protocadherin Fat 4 [Crassostrea gigas] 2e-246; gi|923400703|gb|KOR32988.1|hypothetical protein TI05_03815, partial [Achromatium sp. WMS3] 2e-202; gi|1011123256|ref|WP_062045116.1|hypothetical protein [Lentimicrobium saccharophilum] 1e-193; gi|763068078|ref|WP_043949787.1|hypothetical protein [Candidatus Phaeomarinobacter ectocarpi] 1e-192; gi|499430652|ref|WP_011118116.1|cellulosome anchoring protein [Rhodopirellula baltica] 5e-177;
NvERTx.4.131566 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131572 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136116 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136117 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136122 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136123 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139305 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140886 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140887 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140889 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140656 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140657 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147899 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.157681 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.157682 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158853 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.162128 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166150 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166151 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168883 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.178260 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.190221 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193314 R-4 0.997814181056 E-2 0.999999816205 Q9QZ81 Protein argonaute-2 {ECO:0000255|HAMAP-Rule:MF_03031} gi|544205254|gb|AGW15594.1|argonaute 1 [Nematostella vectensis], 0e+00
other nr_hits gi|156399409|ref|XP_001638494.1|predicted protein [Nematostella vectensis] 0e+00; gi|999965053|gb|KXJ04231.1|Protein argonaute-2 [Exaiptasia pallida] 4e-256; gi|1126162216|ref|XP_019634638.1|PREDICTED: protein argonaute-2-like isoform X4 [Branchiostoma belcheri] 4e-253; gi|1073706505|gb|JAT96309.1|putative translation initiation factor 2c, partial [Amblyomma aureolatum] 2e-252; gi|957832551|ref|XP_014666292.1|PREDICTED: protein argonaute-2-like isoform X5 [Priapulus caudatus] 3e-252; gi|957832553|ref|XP_014666293.1|PREDICTED: protein argonaute-2-like isoform X6 [Priapulus caudatus] 3e-252; gi|1129371427|dbj|BAW35367.1|Argonaute1 [Locusta migratoria] 4e-252; gi|516306731|gb|AGO85968.1|argonaute 1, partial [Locusta migratoria] 4e-252; gi|659681975|gb|AID68365.1|argonaute 1 [Samia ricini] 5e-252;
NvERTx.4.193315 R-4 0.997814181056 E-2 0.999999816205 Q9UKV8 Protein argonaute-2 {ECO:0000255|HAMAP-Rule:MF_03031} gi|544205254|gb|AGW15594.1|argonaute 1 [Nematostella vectensis], 0e+00
other nr_hits gi|156399409|ref|XP_001638494.1|predicted protein [Nematostella vectensis] 0e+00; gi|999965053|gb|KXJ04231.1|Protein argonaute-2 [Exaiptasia pallida] 0e+00; gi|1126162216|ref|XP_019634638.1|PREDICTED: protein argonaute-2-like isoform X4 [Branchiostoma belcheri] 0e+00; gi|1126162214|ref|XP_019634632.1|PREDICTED: protein argonaute-2-like isoform X3 [Branchiostoma belcheri] 0e+00; gi|1126162212|ref|XP_019634625.1|PREDICTED: protein argonaute-2-like isoform X2 [Branchiostoma belcheri] 0e+00; gi|1073706505|gb|JAT96309.1|putative translation initiation factor 2c, partial [Amblyomma aureolatum] 0e+00; gi|1126191020|ref|XP_019628450.1|PREDICTED: protein argonaute-2-like isoform X2 [Branchiostoma belcheri] 0e+00; gi|1126162210|ref|XP_019634618.1|PREDICTED: protein argonaute-2-like isoform X1 [Branchiostoma belcheri] 0e+00; gi|1126191018|ref|XP_019628449.1|PREDICTED: protein argonaute-2-like isoform X1 [Branchiostoma belcheri] 0e+00;
NvERTx.4.198304 R-4 0.997814181056 E-2 0.999999816205 A0A1S3IZ72_LINUN cingulin-like {ECO:0000313|RefSeq:XP_013403313.1} gi|919039675|ref|XP_013403313.1|PREDICTED: cingulin-like, partial [Lingula anatina], 9e-32
other nr_hits gi|123469906|ref|XP_001318162.1|viral A-type inclusion protein [Trichomonas vaginalis G3] 1e-30; gi|1061107007|ref|XP_017879811.1|PREDICTED: myosin-2 heavy chain [Ceratina calcarata] 1e-30; gi|154418773|ref|XP_001582404.1|viral A-type inclusion protein [Trichomonas vaginalis G3] 4e-30; gi|762131327|ref|XP_011448828.1|PREDICTED: interaptin [Crassostrea gigas] 3e-29; gi|405957467|gb|EKC23675.1|Laminin subunit alpha-3 [Crassostrea gigas] 3e-29; gi|697495472|ref|XP_009677562.1|PREDICTED: centrosome-associated protein CEP250 isoform X1 [Struthio camelus australis] 4e-29; gi|697495475|ref|XP_009677563.1|PREDICTED: centrosome-associated protein CEP250 isoform X2 [Struthio camelus australis] 4e-29; gi|915123667|ref|XP_013333097.1|hypothetical protein EMWEY_00003100 [Eimeria maxima] 4e-29; gi|916414164|ref|XP_013228313.1|hypothetical protein, conserved [Eimeria tenella] 4e-29;
NvERTx.4.198319 R-4 0.997814181056 E-2 0.999999816205 A0A1S3IZ72_LINUN cingulin-like {ECO:0000313|RefSeq:XP_013403313.1} gi|999976525|gb|KXJ15699.1|hypothetical protein AC249_AIPGENE21403 [Exaiptasia pallida], 3e-23
other nr_hits gi|1126188542|ref|XP_019627095.1|PREDICTED: myosin-9-like isoform X2 [Branchiostoma belcheri] 3e-18; gi|1126188544|ref|XP_019627096.1|PREDICTED: myosin-11-like isoform X3 [Branchiostoma belcheri] 3e-18; gi|1126188548|ref|XP_019627099.1|PREDICTED: myosin-9-like isoform X5 [Branchiostoma belcheri] 3e-18; gi|1126188540|ref|XP_019627094.1|PREDICTED: myosin-9-like isoform X1 [Branchiostoma belcheri] 3e-18; gi|1126188546|ref|XP_019627097.1|PREDICTED: myosin-11-like isoform X4 [Branchiostoma belcheri] 3e-18; gi|919039675|ref|XP_013403313.1|PREDICTED: cingulin-like, partial [Lingula anatina] 2e-15; gi|762131327|ref|XP_011448828.1|PREDICTED: interaptin [Crassostrea gigas] 1e-14; gi|405957467|gb|EKC23675.1|Laminin subunit alpha-3 [Crassostrea gigas] 1e-14; gi|871204743|ref|XP_012941703.1|PREDICTED: trichohyalin-like [Aplysia californica] 6e-14;
NvERTx.4.198306 R-4 0.997814181056 E-2 0.999999816205 A0A1S3IZ72_LINUN cingulin-like {ECO:0000313|RefSeq:XP_013403313.1} gi|919039675|ref|XP_013403313.1|PREDICTED: cingulin-like, partial [Lingula anatina], 9e-32
other nr_hits gi|123469906|ref|XP_001318162.1|viral A-type inclusion protein [Trichomonas vaginalis G3] 2e-30; gi|762131327|ref|XP_011448828.1|PREDICTED: interaptin [Crassostrea gigas] 3e-29; gi|405957467|gb|EKC23675.1|Laminin subunit alpha-3 [Crassostrea gigas] 3e-29; gi|154418773|ref|XP_001582404.1|viral A-type inclusion protein [Trichomonas vaginalis G3] 3e-29; gi|697495472|ref|XP_009677562.1|PREDICTED: centrosome-associated protein CEP250 isoform X1 [Struthio camelus australis] 4e-29; gi|697495475|ref|XP_009677563.1|PREDICTED: centrosome-associated protein CEP250 isoform X2 [Struthio camelus australis] 4e-29; gi|915123667|ref|XP_013333097.1|hypothetical protein EMWEY_00003100 [Eimeria maxima] 1e-28; gi|1126188544|ref|XP_019627096.1|PREDICTED: myosin-11-like isoform X3 [Branchiostoma belcheri] 2e-28; gi|1126188548|ref|XP_019627099.1|PREDICTED: myosin-9-like isoform X5 [Branchiostoma belcheri] 2e-28;
NvERTx.4.198307 R-4 0.997814181056 E-2 0.999999816205 A0A1S3IZ72_LINUN cingulin-like {ECO:0000313|RefSeq:XP_013403313.1} gi|1126188546|ref|XP_019627097.1|PREDICTED: myosin-11-like isoform X4 [Branchiostoma belcheri], 1e-32
other nr_hits gi|1126188542|ref|XP_019627095.1|PREDICTED: myosin-9-like isoform X2 [Branchiostoma belcheri] 3e-32; gi|1126188544|ref|XP_019627096.1|PREDICTED: myosin-11-like isoform X3 [Branchiostoma belcheri] 3e-32; gi|1126188548|ref|XP_019627099.1|PREDICTED: myosin-9-like isoform X5 [Branchiostoma belcheri] 3e-32; gi|1126188540|ref|XP_019627094.1|PREDICTED: myosin-9-like isoform X1 [Branchiostoma belcheri] 3e-32; gi|919039675|ref|XP_013403313.1|PREDICTED: cingulin-like, partial [Lingula anatina] 3e-31; gi|123469906|ref|XP_001318162.1|viral A-type inclusion protein [Trichomonas vaginalis G3] 2e-30; gi|697495472|ref|XP_009677562.1|PREDICTED: centrosome-associated protein CEP250 isoform X1 [Struthio camelus australis] 4e-29; gi|697495475|ref|XP_009677563.1|PREDICTED: centrosome-associated protein CEP250 isoform X2 [Struthio camelus australis] 4e-29; gi|762131327|ref|XP_011448828.1|PREDICTED: interaptin [Crassostrea gigas] 6e-29;
NvERTx.4.198309 R-4 0.997814181056 E-2 0.999999816205 A0A1S3IZ72_LINUN cingulin-like {ECO:0000313|RefSeq:XP_013403313.1} gi|999976525|gb|KXJ15699.1|hypothetical protein AC249_AIPGENE21403 [Exaiptasia pallida], 3e-23
other nr_hits gi|1126188542|ref|XP_019627095.1|PREDICTED: myosin-9-like isoform X2 [Branchiostoma belcheri] 3e-18; gi|1126188544|ref|XP_019627096.1|PREDICTED: myosin-11-like isoform X3 [Branchiostoma belcheri] 3e-18; gi|1126188548|ref|XP_019627099.1|PREDICTED: myosin-9-like isoform X5 [Branchiostoma belcheri] 3e-18; gi|1126188540|ref|XP_019627094.1|PREDICTED: myosin-9-like isoform X1 [Branchiostoma belcheri] 3e-18; gi|1126188546|ref|XP_019627097.1|PREDICTED: myosin-11-like isoform X4 [Branchiostoma belcheri] 3e-18; gi|919039675|ref|XP_013403313.1|PREDICTED: cingulin-like, partial [Lingula anatina] 2e-15; gi|762131327|ref|XP_011448828.1|PREDICTED: interaptin [Crassostrea gigas] 1e-14; gi|405957467|gb|EKC23675.1|Laminin subunit alpha-3 [Crassostrea gigas] 1e-14; gi|871204743|ref|XP_012941703.1|PREDICTED: trichohyalin-like [Aplysia californica] 6e-14;
NvERTx.4.200177 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.213893 R-4 0.997814181056 E-2 0.999999816205 Q9UKV8 Protein argonaute-2 {ECO:0000255|HAMAP-Rule:MF_03031} gi|156399409|ref|XP_001638494.1|predicted protein [Nematostella vectensis], 3e-54
other nr_hits gi|544205254|gb|AGW15594.1|argonaute 1 [Nematostella vectensis] 3e-54; gi|999965053|gb|KXJ04231.1|Protein argonaute-2 [Exaiptasia pallida] 9e-48; gi|469517992|gb|AGH55729.1|argonaute A, partial [Brachionus calyciflorus] 2e-46; gi|469518385|gb|AGH55928.1|Argonaute A, partial [Brachionus manjavacas] 5e-46; gi|258683580|embl|CAP07638.1|argonaute 3 [Oikopleura dioica] 1e-45; gi|313224549|embl|CBY20339.1|unnamed protein product [Oikopleura dioica] 1e-45; gi|313224550|embl|CBY20340.1|unnamed protein product [Oikopleura dioica] 1e-45; gi|1087817520|ref|XP_018672901.1|PREDICTED: protein argonaute-2 isoform X1 [Ciona intestinalis] 7e-45; gi|1087817523|ref|XP_018672902.1|PREDICTED: protein argonaute-2 isoform X2 [Ciona intestinalis] 7e-45;
NvERTx.4.226300 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.226568 R-4 0.997814181056 E-2 0.999999816205 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71077 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description gi|156405810|ref|XP_001640924.1|predicted protein [Nematostella vectensis], 3e-117
other nr_hits gi|999976108|gb|KXJ15282.1|hypothetical protein AC249_AIPGENE14692 [Exaiptasia pallida] 2e-44;
NvERTx.4.71078 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71079 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.71082 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description gi|156405810|ref|XP_001640924.1|predicted protein [Nematostella vectensis], 3e-41
other nr_hits gi|999976108|gb|KXJ15282.1|hypothetical protein AC249_AIPGENE14692 [Exaiptasia pallida] 5e-13;
NvERTx.4.85394 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112328 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112330 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130351 R-9 0.782052878534 E-2 0.999999813818 No_Uniprotmatch No_Description None
other nr_hits NA
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