#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.165872 R-5 0.613106538776 E-2 0.324378932352 A1A4R8 Cell division cycle protein 23 homolog gi|156390473|ref|XP_001635295.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|390349359|ref|XP_782099.2|PREDICTED: cell division cycle protein 23 homolog isoform X1 [Strongylocentrotus purpuratus] 3e-161; gi|585645750|ref|XP_006811611.1|PREDICTED: cell division cycle protein 23 homolog [Saccoglossus kowalevskii] 3e-160; gi|998719696|ref|XP_015497773.1|PREDICTED: cell division cycle protein 23 homolog isoform X1 [Parus major] 1e-155; gi|683916446|ref|XP_009089830.1|PREDICTED: cell division cycle protein 23 homolog [Serinus canaria] 1e-155; gi|543360238|ref|XP_005523780.1|PREDICTED: cell division cycle protein 23 homolog isoform X1 [Pseudopodoces humilis] 1e-155; gi|959089468|ref|XP_014748810.1|PREDICTED: cell division cycle protein 23 homolog [Sturnus vulgaris] 2e-155; gi|525029071|ref|XP_005061944.1|PREDICTED: cell division cycle protein 23 homolog isoform X1 [Ficedula albicollis] 4e-155; gi|930232363|ref|XP_014167669.1|PREDICTED: LOW QUALITY PROTEIN: cell division cycle protein 23 homolog [Geospiza fortis] 5e-155; gi|929508310|ref|XP_014126792.1|PREDICTED: cell division cycle protein 23 homolog [Zonotrichia albicollis] 5e-155;
NvERTx.4.165873 R-5 0.613106538776 E-2 0.324378932352 Q8BGZ4 Cell division cycle protein 23 homolog gi|156390473|ref|XP_001635295.1|predicted protein [Nematostella vectensis], 8e-55
other nr_hits gi|156352344|ref|XP_001622717.1|predicted protein [Nematostella vectensis] 7e-30; gi|999986192|gb|KXJ25333.1|Cell division cycle protein 23-like [Exaiptasia pallida] 2e-25; gi|999966529|gb|KXJ05703.1|Cell division cycle protein 23-like, partial [Exaiptasia pallida] 2e-25; gi|780155718|ref|XP_011682344.1|PREDICTED: cell division cycle protein 23 homolog [Strongylocentrotus purpuratus] 3e-12; gi|390349359|ref|XP_782099.2|PREDICTED: cell division cycle protein 23 homolog isoform X1 [Strongylocentrotus purpuratus] 4e-12; gi|585645750|ref|XP_006811611.1|PREDICTED: cell division cycle protein 23 homolog [Saccoglossus kowalevskii] 1e-11; gi|260790965|ref|XP_002590511.1|hypothetical protein BRAFLDRAFT_124509 [Branchiostoma floridae] 7e-11; gi|1126208143|ref|XP_019637726.1|PREDICTED: cell division cycle protein 23 homolog [Branchiostoma belcheri] 2e-10; gi|556965942|ref|XP_005992447.1|PREDICTED: cell division cycle protein 23 homolog isoform X2 [Latimeria chalumnae] 9e-09;
NvERTx.4.165874 R-5 0.613106538776 E-2 0.324378932352 A1A4R8 Cell division cycle protein 23 homolog gi|156390473|ref|XP_001635295.1|predicted protein [Nematostella vectensis], 2e-96
other nr_hits gi|156352344|ref|XP_001622717.1|predicted protein [Nematostella vectensis] 2e-78; gi|999966529|gb|KXJ05703.1|Cell division cycle protein 23-like, partial [Exaiptasia pallida] 2e-47; gi|999986192|gb|KXJ25333.1|Cell division cycle protein 23-like [Exaiptasia pallida] 4e-42; gi|780155718|ref|XP_011682344.1|PREDICTED: cell division cycle protein 23 homolog [Strongylocentrotus purpuratus] 2e-40; gi|390349359|ref|XP_782099.2|PREDICTED: cell division cycle protein 23 homolog isoform X1 [Strongylocentrotus purpuratus] 3e-40; gi|585645750|ref|XP_006811611.1|PREDICTED: cell division cycle protein 23 homolog [Saccoglossus kowalevskii] 6e-39; gi|1126208143|ref|XP_019637726.1|PREDICTED: cell division cycle protein 23 homolog [Branchiostoma belcheri] 1e-36; gi|260790965|ref|XP_002590511.1|hypothetical protein BRAFLDRAFT_124509 [Branchiostoma floridae] 7e-36; gi|704538661|ref|XP_010192630.1|PREDICTED: cell division cycle protein 23 homolog, partial [Mesitornis unicolor] 4e-34;
NvERTx.4.165875 R-5 0.613106538776 E-2 0.324378932352 O94556 Anaphase-promoting complex subunit 8 gi|156390473|ref|XP_001635295.1|predicted protein [Nematostella vectensis], 5e-24
other nr_hits gi|1005462910|ref|XP_015768484.1|PREDICTED: cell division cycle protein 23 homolog isoform X1 [Acropora digitifera] 2e-17; gi|1005462913|ref|XP_015768485.1|PREDICTED: cell division cycle protein 23 homolog isoform X2 [Acropora digitifera] 2e-17; gi|546318384|ref|XP_005716715.1|TPR repeat-containing protein [Chondrus crispus] 2e-17; gi|545364147|ref|XP_005647138.1|TPR-like protein [Coccomyxa subellipsoidea C-169] 2e-17; gi|762142614|ref|XP_011454530.1|PREDICTED: cell division cycle protein 23 homolog [Crassostrea gigas] 2e-17; gi|1108470597|embl|CRL01320.1|CLUMA_CG014394, isoform A [Clunio marinus] 4e-17; gi|1127418754|gb|OLL22911.1|Anaphase-promoting complex subunit 8 [Neolecta irregularis DAH-3] 6e-17; gi|1039912372|ref|XP_017182277.1|PREDICTED: anaphase-promoting complex subunit 8-like [Malus domestica] 6e-17; gi|1029030227|ref|XP_016678877.1|PREDICTED: anaphase-promoting complex subunit 8-like [Gossypium hirsutum] 6e-17;