#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.202699 R-3 0.850789534724 E-2 0.563892167774 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.6197 R-1 0.666395104303 E-2 0.563809691578 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.6198 R-1 0.666395104303 E-2 0.563809691578 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.195884 R-1 0.666395104303 E-2 0.563809691578 Q0VFD8 Biogenesis of lysosome-related organelles complex 1 subunit 1 gi|156391143|ref|XP_001635628.1|predicted protein [Nematostella vectensis], 4e-40
other nr_hits gi|1005437174|ref|XP_015756028.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Acropora digitifera] 1e-30; gi|999965547|gb|KXJ04725.1|Biogenesis of lysosome-related organelles complex 1 subunit 1, partial [Exaiptasia pallida] 1e-26; gi|449690510|ref|XP_002157013.2|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Hydra vulgaris] 5e-24; gi|1025140909|ref|XP_016414750.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Sinocyclocheilus rhinocerous] 2e-23; gi|291228563|ref|XP_002734244.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Saccoglossus kowalevskii] 3e-23; gi|602659599|ref|XP_007435489.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Python bivittatus] 3e-23; gi|1025312185|ref|XP_016384324.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Sinocyclocheilus rhinocerous] 4e-23; gi|1020422007|ref|XP_016130068.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Sinocyclocheilus grahami] 4e-23; gi|1126205081|ref|XP_019636057.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Branchiostoma belcheri] 6e-23;
NvERTx.4.195885 R-1 0.666395104303 E-2 0.563809691578 Q0VFD8 Biogenesis of lysosome-related organelles complex 1 subunit 1 gi|156391143|ref|XP_001635628.1|predicted protein [Nematostella vectensis], 8e-41
other nr_hits gi|1005437174|ref|XP_015756028.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Acropora digitifera] 2e-27; gi|156550831|ref|XP_001601076.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Nasonia vitripennis] 1e-21; gi|1070151577|ref|XP_018339851.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Trachymyrmex septentrionalis] 5e-21; gi|1009422586|gb|KYN40950.1|Biogenesis of lysosome-related organelles complex 1 subunit 1 [Trachymyrmex septentrionalis] 5e-21; gi|766936495|ref|XP_011500660.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Ceratosolen solmsi marchali] 9e-21; gi|1020422007|ref|XP_016130068.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Sinocyclocheilus grahami] 1e-20; gi|1009357021|gb|KYM82296.1|Biogenesis of lysosome-related organelles complex 1 subunit 1 [Atta colombica] 1e-20; gi|826461988|ref|XP_012534387.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X1 [Monomorium pharaonis] 1e-20; gi|826461996|ref|XP_012534389.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X2 [Monomorium pharaonis] 1e-20;
NvERTx.4.195886 R-1 0.666395104303 E-2 0.563809691578 Q0VFD8 Biogenesis of lysosome-related organelles complex 1 subunit 1 gi|156391143|ref|XP_001635628.1|predicted protein [Nematostella vectensis], 9e-41
other nr_hits gi|1005437174|ref|XP_015756028.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Acropora digitifera] 1e-27; gi|156550831|ref|XP_001601076.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Nasonia vitripennis] 3e-21; gi|1070151577|ref|XP_018339851.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Trachymyrmex septentrionalis] 6e-21; gi|1009422586|gb|KYN40950.1|Biogenesis of lysosome-related organelles complex 1 subunit 1 [Trachymyrmex septentrionalis] 6e-21; gi|1009357021|gb|KYM82296.1|Biogenesis of lysosome-related organelles complex 1 subunit 1 [Atta colombica] 1e-20; gi|826461988|ref|XP_012534387.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X1 [Monomorium pharaonis] 1e-20; gi|826461996|ref|XP_012534389.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X2 [Monomorium pharaonis] 1e-20; gi|746865207|ref|XP_011063631.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Acromyrmex echinatior] 1e-20; gi|332019257|gb|EGI59766.1|Biogenesis of lysosome-related organelles complex 1 subunit 1 [Acromyrmex echinatior] 1e-20;
NvERTx.4.195887 R-1 0.666395104303 E-2 0.563809691578 Q0VFD8 Biogenesis of lysosome-related organelles complex 1 subunit 1 gi|156391143|ref|XP_001635628.1|predicted protein [Nematostella vectensis], 5e-61
other nr_hits gi|1005437174|ref|XP_015756028.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Acropora digitifera] 5e-45; gi|156550831|ref|XP_001601076.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Nasonia vitripennis] 5e-34; gi|1070151577|ref|XP_018339851.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Trachymyrmex septentrionalis] 6e-34; gi|1025312185|ref|XP_016384324.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Sinocyclocheilus rhinocerous] 8e-34; gi|1025140909|ref|XP_016414750.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Sinocyclocheilus rhinocerous] 8e-34; gi|1020422007|ref|XP_016130068.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Sinocyclocheilus grahami] 1e-33; gi|826461988|ref|XP_012534387.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X1 [Monomorium pharaonis] 1e-33; gi|826461996|ref|XP_012534389.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X2 [Monomorium pharaonis] 1e-33; gi|746865207|ref|XP_011063631.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Acromyrmex echinatior] 1e-33;
NvERTx.4.195888 R-1 0.666395104303 E-2 0.563809691578 Q0VFD8 Biogenesis of lysosome-related organelles complex 1 subunit 1 gi|156391143|ref|XP_001635628.1|predicted protein [Nematostella vectensis], 6e-28
other nr_hits gi|1005437174|ref|XP_015756028.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1-like [Acropora digitifera] 1e-18; gi|156550831|ref|XP_001601076.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Nasonia vitripennis] 5e-14; gi|1070151577|ref|XP_018339851.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Trachymyrmex septentrionalis] 2e-13; gi|1009422586|gb|KYN40950.1|Biogenesis of lysosome-related organelles complex 1 subunit 1 [Trachymyrmex septentrionalis] 2e-13; gi|766936495|ref|XP_011500660.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Ceratosolen solmsi marchali] 2e-13; gi|1009357021|gb|KYM82296.1|Biogenesis of lysosome-related organelles complex 1 subunit 1 [Atta colombica] 4e-13; gi|826461988|ref|XP_012534387.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X1 [Monomorium pharaonis] 4e-13; gi|826461996|ref|XP_012534389.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X2 [Monomorium pharaonis] 4e-13; gi|746865207|ref|XP_011063631.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Acromyrmex echinatior] 4e-13;
NvERTx.4.195889 R-1 0.666395104303 E-2 0.563809691578 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.214512 R-1 0.666395104303 E-2 0.563809691578 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.233885 NA NA E-2 0.562121411491 No_Uniprotmatch No_Description gi|156374252|ref|XP_001629722.1|predicted protein [Nematostella vectensis], 1e-42
other nr_hits gi|156405300|ref|XP_001640670.1|predicted protein [Nematostella vectensis] 2e-24; gi|156392084|ref|XP_001635879.1|predicted protein [Nematostella vectensis] 6e-22; gi|156405140|ref|XP_001640590.1|predicted protein [Nematostella vectensis] 3e-14; gi|156398253|ref|XP_001638103.1|predicted protein [Nematostella vectensis] 2e-10; gi|1005479204|ref|XP_015776325.1|PREDICTED: neuromedin-U receptor 2-like [Acropora digitifera] 2e-08; gi|156376795|ref|XP_001630544.1|predicted protein [Nematostella vectensis] 7e-08; gi|1005461304|ref|XP_015767741.1|PREDICTED: kappa-type opioid receptor-like [Acropora digitifera] 2e-07; gi|1005479212|ref|XP_015776330.1|PREDICTED: kappa-type opioid receptor-like [Acropora digitifera] 2e-07; gi|156346791|ref|XP_001621531.1|hypothetical protein NEMVEDRAFT_v1g221882 [Nematostella vectensis] 2e-07;
NvERTx.4.68770 NA NA E-2 0.562121411491 No_Uniprotmatch No_Description gi|156374252|ref|XP_001629722.1|predicted protein [Nematostella vectensis], 2e-49
other nr_hits gi|156405300|ref|XP_001640670.1|predicted protein [Nematostella vectensis] 2e-16; gi|156392084|ref|XP_001635879.1|predicted protein [Nematostella vectensis] 9e-16; gi|156398253|ref|XP_001638103.1|predicted protein [Nematostella vectensis] 8e-12; gi|156373771|ref|XP_001629484.1|predicted protein [Nematostella vectensis] 2e-10;
NvERTx.4.211070 NA NA E-2 0.562121411491 No_Uniprotmatch No_Description gi|156374252|ref|XP_001629722.1|predicted protein [Nematostella vectensis], 6e-27
other nr_hits gi|156392084|ref|XP_001635879.1|predicted protein [Nematostella vectensis] 2e-07; gi|156398253|ref|XP_001638103.1|predicted protein [Nematostella vectensis] 5e-06; gi|156405300|ref|XP_001640670.1|predicted protein [Nematostella vectensis] 5e-06; gi|156373771|ref|XP_001629484.1|predicted protein [Nematostella vectensis] 6e-06;
NvERTx.4.30270 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137837 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137838 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158307 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.161353 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197109 R-1 0.520976817393 E-2 0.561484066582 Q08DU8 Biogenesis of lysosome-related organelles complex 1 subunit 6 gi|156399734|ref|XP_001638656.1|predicted protein [Nematostella vectensis], 1e-61
other nr_hits gi|999987669|gb|KXJ26780.1|Biogenesis of lysosome-related organelles complex 1 subunit 6 [Exaiptasia pallida] 7e-24; gi|1005458933|ref|XP_015766606.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6-like isoform X1 [Acropora digitifera] 9e-19; gi|1005458935|ref|XP_015766607.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6-like isoform X2 [Acropora digitifera] 6e-18; gi|961106853|ref|XP_014777464.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6-like [Octopus bimaculoides] 3e-15; gi|291242476|ref|XP_002741133.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6-like [Saccoglossus kowalevskii] 6e-15; gi|919053065|ref|XP_013408437.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6-like [Lingula anatina] 2e-13; gi|1126180159|ref|XP_019622513.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6-like [Branchiostoma belcheri] 2e-13; gi|260820333|ref|XP_002605489.1|hypothetical protein BRAFLDRAFT_126799 [Branchiostoma floridae] 9e-13; gi|1049287412|ref|XP_017540290.1|PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 6 [Pygocentrus nattereri] 2e-12;
NvERTx.4.197110 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197119 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197674 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197675 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202141 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202142 R-1 0.520976817393 E-2 0.561484066582 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.230146 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.27179 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.95711 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96164 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137197 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145436 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153522 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170126 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170143 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180661 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184080 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description gi|156342096|ref|XP_001620877.1|hypothetical protein NEMVEDRAFT_v1g248749 [Nematostella vectensis], 4e-164
other nr_hits gi|156388901|ref|XP_001634731.1|predicted protein [Nematostella vectensis] 1e-18; gi|156388819|ref|XP_001634690.1|predicted protein [Nematostella vectensis] 2e-10; gi|156320554|ref|XP_001618201.1|hypothetical protein NEMVEDRAFT_v1g248894 [Nematostella vectensis] 9e-07;
NvERTx.4.184081 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description gi|156342096|ref|XP_001620877.1|hypothetical protein NEMVEDRAFT_v1g248749 [Nematostella vectensis], 3e-192
other nr_hits gi|156388901|ref|XP_001634731.1|predicted protein [Nematostella vectensis] 6e-22; gi|156388819|ref|XP_001634690.1|predicted protein [Nematostella vectensis] 4e-10; gi|156320554|ref|XP_001618201.1|hypothetical protein NEMVEDRAFT_v1g248894 [Nematostella vectensis] 2e-06;
NvERTx.4.184087 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184090 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184092 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184093 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description gi|156342096|ref|XP_001620877.1|hypothetical protein NEMVEDRAFT_v1g248749 [Nematostella vectensis], 6e-27
other nr_hits NA
NvERTx.4.185562 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185563 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.189324 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193412 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.208379 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.218120 R-6 0.99992598414 E-2 0.561093536334 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.56652 R-8 0.993648336063 E-2 0.559316751479 No_Uniprotmatch No_Description gi|156344594|ref|XP_001621243.1|hypothetical protein NEMVEDRAFT_v1g233833 [Nematostella vectensis], 1e-23
other nr_hits NA
NvERTx.4.1857 R-5 0.988742751537 E-2 0.558894202665 NA NA None
other nr_hits NA
NvERTx.4.1858 R-5 0.988742751537 E-2 0.558894202665 No_Uniprotmatch No_Description None
other nr_hits NA
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