#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.26160 R-7 0.855883106225 E-1 0.99999999954 P70187 Hippocampus abundant transcript 1 protein {ECO:0000250|UniProtKB:Q96MC6} gi|156393541|ref|XP_001636386.1|predicted protein [Nematostella vectensis], 5e-27
other nr_hits gi|999980105|gb|KXJ19279.1|Hippocampus abundant transcript 1 protein [Exaiptasia pallida] 3e-20; gi|946679593|ref|XP_006131965.2|PREDICTED: hippocampus abundant transcript-like protein 1 [Pelodiscus sinensis] 5e-13; gi|157823739|ref|NP_001099937.1|hippocampus abundant gene transcript 1 [Rattus norvegicus] 2e-12; gi|564338571|ref|XP_006233285.1|PREDICTED: hippocampus abundant transcript 1 protein isoform X1 [Rattus norvegicus] 2e-12; gi|564338573|ref|XP_006233286.1|PREDICTED: hippocampus abundant transcript 1 protein isoform X2 [Rattus norvegicus] 2e-12; gi|697429311|ref|XP_009687930.1|PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Struthio camelus australis] 3e-12; gi|697429318|ref|XP_009687939.1|PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Struthio camelus australis] 3e-12; gi|678205211|gb|KFV72192.1|Hippocampus abundant transcript-like 1, partial [Struthio camelus australis] 3e-12; gi|699657114|ref|XP_009897712.1|PREDICTED: hippocampus abundant transcript-like protein 1, partial [Picoides pubescens] 3e-12;
NvERTx.4.26699 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.26700 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.27924 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.32996 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description gi|156393541|ref|XP_001636386.1|predicted protein [Nematostella vectensis], 2e-23
other nr_hits NA
NvERTx.4.35785 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.52519 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.52865 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.63724 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.74003 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76899 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.83101 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85976 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.86942 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.86943 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87735 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.87985 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91544 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.102429 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.107898 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.107494 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description gi|999972839|gb|KXJ12013.1|Mucosa-associated lymphoid tissue lymphoma translocation protein 1 [Exaiptasia pallida], 2e-18
other nr_hits gi|1005422569|ref|XP_015767200.1|PREDICTED: mucosa-associated lymphoid tissue lymphoma translocation protein 1-like [Acropora digitifera] 9e-17;
NvERTx.4.111501 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111502 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111503 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111504 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111505 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111506 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111507 R-7 0.855883106225 E-1 0.99999999954 B2RYH9 Hippocampus abundant transcript-like protein 1 {ECO:0000250|UniProtKB:Q5SR56} gi|156393541|ref|XP_001636386.1|predicted protein [Nematostella vectensis], 1e-71
other nr_hits gi|999980105|gb|KXJ19279.1|Hippocampus abundant transcript 1 protein [Exaiptasia pallida] 4e-40; gi|1005487623|ref|XP_015780404.1|PREDICTED: LOW QUALITY PROTEIN: hippocampus abundant transcript 1 protein-like [Acropora digitifera] 2e-26; gi|946679593|ref|XP_006131965.2|PREDICTED: hippocampus abundant transcript-like protein 1 [Pelodiscus sinensis] 5e-21; gi|291223342|ref|XP_002731669.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Saccoglossus kowalevskii] 5e-21; gi|157823739|ref|NP_001099937.1|hippocampus abundant gene transcript 1 [Rattus norvegicus] 8e-21; gi|564338571|ref|XP_006233285.1|PREDICTED: hippocampus abundant transcript 1 protein isoform X1 [Rattus norvegicus] 8e-21; gi|564338573|ref|XP_006233286.1|PREDICTED: hippocampus abundant transcript 1 protein isoform X2 [Rattus norvegicus] 8e-21; gi|556995110|ref|XP_006001415.1|PREDICTED: hippocampus abundant transcript-like protein 1 [Latimeria chalumnae] 1e-20; gi|530622735|ref|XP_005300970.1|PREDICTED: hippocampus abundant transcript 1 protein isoform X1 [Chrysemys picta bellii] 1e-20;
NvERTx.4.111508 R-7 0.855883106225 E-1 0.99999999954 P70187 Hippocampus abundant transcript 1 protein {ECO:0000250|UniProtKB:Q96MC6} gi|156393541|ref|XP_001636386.1|predicted protein [Nematostella vectensis], 3e-134
other nr_hits gi|831542056|ref|XP_012724942.1|PREDICTED: hippocampus abundant transcript 1 protein [Fundulus heteroclitus] 3e-107; gi|929241317|ref|XP_013996632.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Salmo salar] 4e-107; gi|1025391531|ref|XP_016405367.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Sinocyclocheilus rhinocerous] 6e-107; gi|47223102|embl|CAG07189.1|unnamed protein product [Tetraodon nigroviridis] 6e-107; gi|928028983|ref|XP_013862872.1|PREDICTED: hippocampus abundant transcript 1 protein [Austrofundulus limnaeus] 8e-107; gi|291223342|ref|XP_002731669.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Saccoglossus kowalevskii] 8e-107; gi|642111741|embl|CDQ70513.1|unnamed protein product [Oncorhynchus mykiss] 1e-106; gi|1101549986|ref|XP_018940900.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Cyprinus carpio] 1e-106; gi|1041088654|ref|XP_017266636.1|PREDICTED: hippocampus abundant transcript 1 protein [Kryptolebias marmoratus] 1e-106;
NvERTx.4.111509 R-7 0.855883106225 E-1 0.99999999954 P70187 Hippocampus abundant transcript 1 protein {ECO:0000250|UniProtKB:Q96MC6} gi|156393541|ref|XP_001636386.1|predicted protein [Nematostella vectensis], 3e-269
other nr_hits gi|999980105|gb|KXJ19279.1|Hippocampus abundant transcript 1 protein [Exaiptasia pallida] 2e-191; gi|929241317|ref|XP_013996632.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Salmo salar] 8e-172; gi|573904362|ref|XP_006639903.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Lepisosteus oculatus] 1e-171; gi|1025391531|ref|XP_016405367.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Sinocyclocheilus rhinocerous] 3e-171; gi|831542056|ref|XP_012724942.1|PREDICTED: hippocampus abundant transcript 1 protein [Fundulus heteroclitus] 3e-171; gi|1083276250|ref|XP_018586326.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Scleropages formosus] 4e-171; gi|1101549986|ref|XP_018940900.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Cyprinus carpio] 5e-171; gi|47223102|embl|CAG07189.1|unnamed protein product [Tetraodon nigroviridis] 7e-171; gi|410923927|ref|XP_003975433.1|PREDICTED: hippocampus abundant transcript 1 protein [Takifugu rubripes] 7e-171;
NvERTx.4.111510 R-7 0.855883106225 E-1 0.99999999954 Q5VZR4 Hippocampus abundant transcript-like protein 2 {ECO:0000312|HGNC:HGNC:23672} gi|156393541|ref|XP_001636386.1|predicted protein [Nematostella vectensis], 8e-30
other nr_hits gi|1051212973|ref|XP_017689814.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Lepidothrix coronata] 3e-19; gi|919029744|ref|XP_013398591.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X1 [Lingula anatina] 7e-19; gi|291223342|ref|XP_002731669.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Saccoglossus kowalevskii] 9e-19; gi|1025391531|ref|XP_016405367.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Sinocyclocheilus rhinocerous] 3e-18; gi|830039761|ref|XP_012582123.1|PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Condylura cristata] 3e-18; gi|744549009|ref|XP_010973123.1|PREDICTED: hippocampus abundant transcript-like protein 1 [Camelus dromedarius] 3e-18; gi|743742521|ref|XP_010965794.1|PREDICTED: LOW QUALITY PROTEIN: hippocampus abundant transcript-like protein 1 [Camelus bactrianus] 3e-18; gi|831542056|ref|XP_012724942.1|PREDICTED: hippocampus abundant transcript 1 protein [Fundulus heteroclitus] 4e-18; gi|670996370|ref|XP_008689077.1|PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Ursus maritimus] 4e-18;
NvERTx.4.111511 R-7 0.855883106225 E-1 0.99999999954 P70187 Hippocampus abundant transcript 1 protein {ECO:0000250|UniProtKB:Q96MC6} gi|156393541|ref|XP_001636386.1|predicted protein [Nematostella vectensis], 1e-188
other nr_hits gi|47223102|embl|CAG07189.1|unnamed protein product [Tetraodon nigroviridis] 9e-145; gi|831542056|ref|XP_012724942.1|PREDICTED: hippocampus abundant transcript 1 protein [Fundulus heteroclitus] 6e-144; gi|410923927|ref|XP_003975433.1|PREDICTED: hippocampus abundant transcript 1 protein [Takifugu rubripes] 1e-143; gi|1041088654|ref|XP_017266636.1|PREDICTED: hippocampus abundant transcript 1 protein [Kryptolebias marmoratus] 2e-143; gi|1025391531|ref|XP_016405367.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Sinocyclocheilus rhinocerous] 2e-143; gi|929241317|ref|XP_013996632.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Salmo salar] 2e-143; gi|928028983|ref|XP_013862872.1|PREDICTED: hippocampus abundant transcript 1 protein [Austrofundulus limnaeus] 3e-143; gi|1101549986|ref|XP_018940900.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Cyprinus carpio] 5e-143; gi|1079728644|ref|XP_018533368.1|PREDICTED: hippocampus abundant transcript 1 protein [Lates calcarifer] 5e-143;
NvERTx.4.111512 R-7 0.855883106225 E-1 0.99999999954 Q5VZR4 Hippocampus abundant transcript-like protein 2 {ECO:0000312|HGNC:HGNC:23672} gi|156393541|ref|XP_001636386.1|predicted protein [Nematostella vectensis], 3e-29
other nr_hits gi|919029744|ref|XP_013398591.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X1 [Lingula anatina] 2e-11; gi|449676684|ref|XP_002163804.2|PREDICTED: hippocampus abundant transcript 1 protein-like [Hydra vulgaris] 5e-11; gi|831542056|ref|XP_012724942.1|PREDICTED: hippocampus abundant transcript 1 protein [Fundulus heteroclitus] 6e-11; gi|1025391531|ref|XP_016405367.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Sinocyclocheilus rhinocerous] 8e-11; gi|1101549986|ref|XP_018940900.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Cyprinus carpio] 1e-10; gi|1024965275|ref|XP_016303823.1|PREDICTED: hippocampus abundant transcript 1 protein-like isoform X2 [Sinocyclocheilus anshuiensis] 1e-10; gi|736160915|ref|XP_010788012.1|PREDICTED: LOW QUALITY PROTEIN: hippocampus abundant transcript 1 protein-like [Notothenia coriiceps] 2e-10; gi|291223342|ref|XP_002731669.1|PREDICTED: hippocampus abundant transcript 1 protein-like [Saccoglossus kowalevskii] 2e-10; gi|974093713|ref|XP_015245232.1|PREDICTED: hippocampus abundant transcript 1 protein [Cyprinodon variegatus] 2e-10;
NvERTx.4.118646 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.123975 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.130497 R-7 0.855883106225 E-1 0.99999999954 NA NA None
other nr_hits NA
NvERTx.4.130413 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139968 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153586 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156512 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156513 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.164459 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165652 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166689 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.168950 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.186561 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description gi|999987834|gb|KXJ26943.1|Formin-2 [Exaiptasia pallida], 3e-14
other nr_hits gi|1005448473|ref|XP_015761502.1|PREDICTED: formin-1-like [Acropora digitifera] 1e-13;
NvERTx.4.190029 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193356 R-7 0.855883106225 E-1 0.99999999954 NA NA None
other nr_hits NA
NvERTx.4.193357 R-7 0.855883106225 E-1 0.99999999954 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193358 R-7 0.855883106225 E-1 0.99999999954 NA NA None
other nr_hits NA
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