#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.158569 R-7 0.938260206059 E-1 0.981122296448 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.13628 R-5 0.767880208093 E-1 0.981119059599 A7SNN9 UPF0553 protein v1g230591 gi|156365755|ref|XP_001626809.1|predicted protein [Nematostella vectensis], 6e-194
other nr_hits gi|1005432351|ref|XP_015753765.1|PREDICTED: UPF0553 protein v1g230591-like isoform X1 [Acropora digitifera] 2e-113; gi|999981478|gb|KXJ20652.1|UPF0553 protein [Exaiptasia pallida] 6e-103; gi|585671908|ref|XP_006818133.1|PREDICTED: UPF0553 protein C9orf64 homolog [Saccoglossus kowalevskii] 3e-89; gi|390334298|ref|XP_789899.2|PREDICTED: UPF0553 protein C9orf64 [Strongylocentrotus purpuratus] 4e-86; gi|676486920|ref|XP_009064131.1|hypothetical protein LOTGIDRAFT_195975 [Lottia gigantea] 1e-85; gi|828193449|ref|XP_012563305.1|PREDICTED: UPF0553 protein v1g230591-like [Hydra vulgaris] 9e-85; gi|1005432354|ref|XP_015753766.1|PREDICTED: UPF0553 protein v1g230591-like isoform X2 [Acropora digitifera] 6e-84; gi|595482413|gb|EXX70106.1|hypothetical protein RirG_090270 [Rhizophagus irregularis DAOM 197198w] 3e-83; gi|661186243|embl|CDH51605.1|upf0553 protein c9orf64 homolog [Lichtheimia corymbifera JMRC:FSU:9682] 6e-82;
NvERTx.4.12204 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.19523 R-8 0.988541231363 E-1 0.980968972146 NA NA None
other nr_hits NA
NvERTx.4.76734 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76735 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76736 R-8 0.988541231363 E-1 0.980968972146 A6KWR4 L-rhamnose mutarotase {ECO:0000255|HAMAP-Rule:MF_01663} gi|156405168|ref|XP_001640604.1|predicted protein [Nematostella vectensis], 6e-77
other nr_hits gi|999990897|gb|KXJ29915.1|L-rhamnose mutarotase [Exaiptasia pallida] 9e-60; gi|1005480290|ref|XP_015776879.1|PREDICTED: L-rhamnose mutarotase-like [Acropora digitifera] 9e-52; gi|919010235|ref|XP_013389563.1|PREDICTED: L-rhamnose mutarotase-like [Lingula anatina] 1e-38; gi|1087803442|ref|XP_018670563.1|PREDICTED: uncharacterized protein LOC108950150 [Ciona intestinalis] 3e-38; gi|919035316|ref|XP_013401176.1|PREDICTED: L-rhamnose mutarotase-like [Lingula anatina] 3e-38; gi|919037596|ref|XP_013402238.1|PREDICTED: L-rhamnose mutarotase-like isoform X2 [Lingula anatina] 1e-35; gi|919037594|ref|XP_013402237.1|PREDICTED: uncharacterized protein LOC106167890 isoform X1 [Lingula anatina] 3e-35; gi|948070202|ref|WP_056729036.1|L-rhamnose 1-epimerase [Agromyces sp. Soil535] 3e-27; gi|947505800|ref|WP_056169888.1|L-rhamnose 1-epimerase [Leifsonia sp. Leaf325] 4e-27;
NvERTx.4.79436 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131212 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131202 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131203 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131204 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131205 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131206 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131207 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131208 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131209 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.178854 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.213493 R-8 0.988541231363 E-1 0.980968972146 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.145199 R-6 0.978247310759 E-1 0.980786380163 Q496Y0 LON peptidase N-terminal domain and RING finger protein 3 gi|999966230|gb|KXJ05406.1|LON peptidase N-terminal domain and RING finger protein 3, partial [Exaiptasia pallida], 5e-67
other nr_hits gi|585661678|ref|XP_006816604.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Saccoglossus kowalevskii] 3e-62; gi|919081566|ref|XP_013421842.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Lingula anatina] 2e-59; gi|390342076|ref|XP_001180621.2|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 [Strongylocentrotus purpuratus] 7e-54; gi|1058123281|gb|JAS65289.1|hypothetical protein g.42576, partial [Cuerna arida] 6e-53; gi|557003853|ref|XP_006003946.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 [Latimeria chalumnae] 4e-52; gi|1058209046|gb|JAT08039.1|hypothetical protein g.25551, partial [Graphocephala atropunctata] 1e-51; gi|432880399|ref|XP_004073678.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 [Oryzias latipes] 2e-51; gi|1072278948|ref|XP_018425546.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 isoform X1 [Nanorana parkeri] 9e-51; gi|1072278950|ref|XP_018425547.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 isoform X2 [Nanorana parkeri] 9e-51;
NvERTx.4.145200 R-6 0.978247310759 E-1 0.980786380163 Q496Y0 LON peptidase N-terminal domain and RING finger protein 3 gi|585661678|ref|XP_006816604.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Saccoglossus kowalevskii], 3e-56
other nr_hits gi|999966230|gb|KXJ05406.1|LON peptidase N-terminal domain and RING finger protein 3, partial [Exaiptasia pallida] 4e-54; gi|919081566|ref|XP_013421842.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Lingula anatina] 2e-53; gi|926629138|ref|XP_013780205.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Limulus polyphemus] 3e-50; gi|1058123281|gb|JAS65289.1|hypothetical protein g.42576, partial [Cuerna arida] 8e-48; gi|1003769517|ref|XP_015716263.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 isoform X2 [Coturnix japonica] 2e-47; gi|998688422|ref|XP_015481699.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 isoform X2 [Parus major] 3e-47; gi|1058172270|gb|JAS89783.1|hypothetical protein g.22099, partial [Homalodisca liturata] 9e-47; gi|1058209046|gb|JAT08039.1|hypothetical protein g.25551, partial [Graphocephala atropunctata] 2e-46; gi|942384067|gb|JAN73963.1|LON peptidase N-terminal domain and RING finger protein [Daphnia magna] 2e-46;
NvERTx.4.147800 R-6 0.978247310759 E-1 0.980786380163 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147801 R-6 0.978247310759 E-1 0.980786380163 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147805 R-6 0.978247310759 E-1 0.980786380163 Q9D4H7 LON peptidase N-terminal domain and RING finger protein 3 gi|999989415|gb|KXJ28453.1|LON peptidase N-terminal domain and RING finger protein 3 [Exaiptasia pallida], 1e-82
other nr_hits gi|156382456|ref|XP_001632569.1|predicted protein [Nematostella vectensis] 8e-74; gi|926629138|ref|XP_013780205.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Limulus polyphemus] 7e-67; gi|1069316636|ref|XP_018085615.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Xenopus laevis] 9e-67; gi|585661678|ref|XP_006816604.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Saccoglossus kowalevskii] 1e-66; gi|1069319121|ref|XP_018098644.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Xenopus laevis] 6e-65; gi|524916200|ref|XP_005112882.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 [Aplysia californica] 6e-65; gi|301610356|ref|XP_002934710.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 1 [Xenopus tropicalis] 6e-65; gi|676476700|ref|XP_009060875.1|hypothetical protein LOTGIDRAFT_125925 [Lottia gigantea] 1e-64; gi|762140395|ref|XP_011453365.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 [Crassostrea gigas] 2e-64;
NvERTx.4.147806 R-6 0.978247310759 E-1 0.980786380163 Q9D4H7 LON peptidase N-terminal domain and RING finger protein 3 gi|999989415|gb|KXJ28453.1|LON peptidase N-terminal domain and RING finger protein 3 [Exaiptasia pallida], 1e-82
other nr_hits gi|156382456|ref|XP_001632569.1|predicted protein [Nematostella vectensis] 8e-74; gi|926629138|ref|XP_013780205.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Limulus polyphemus] 7e-67; gi|1069316636|ref|XP_018085615.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Xenopus laevis] 9e-67; gi|585661678|ref|XP_006816604.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Saccoglossus kowalevskii] 1e-66; gi|1069319121|ref|XP_018098644.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Xenopus laevis] 6e-65; gi|524916200|ref|XP_005112882.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 [Aplysia californica] 6e-65; gi|301610356|ref|XP_002934710.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 1 [Xenopus tropicalis] 6e-65; gi|676476700|ref|XP_009060875.1|hypothetical protein LOTGIDRAFT_125925 [Lottia gigantea] 1e-64; gi|762140395|ref|XP_011453365.1|PREDICTED: LON peptidase N-terminal domain and RING finger protein 3 [Crassostrea gigas] 2e-64;
NvERTx.4.147807 R-6 0.978247310759 E-1 0.980786380163 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147808 R-6 0.978247310759 E-1 0.980786380163 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.223317 R-6 0.978247310759 E-1 0.980786380163 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.38953 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101942 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101945 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101946 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101956 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101958 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101959 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101948 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101949 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101954 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.128358 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143698 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143699 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143701 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181258 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181264 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181266 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181268 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181272 R-9 0.99943039528 E-1 0.980591327133 P27105 Erythrocyte band 7 integral membrane protein gi|156390662|ref|XP_001635389.1|predicted protein [Nematostella vectensis], 1e-116
other nr_hits gi|999980529|gb|KXJ19703.1|Mechanosensory protein 2 [Exaiptasia pallida] 7e-92; gi|999980486|gb|KXJ19660.1|Mechanosensory protein 2 [Exaiptasia pallida] 1e-88; gi|1005457887|ref|XP_015766064.1|PREDICTED: erythrocyte band 7 integral membrane protein-like [Acropora digitifera] 1e-84; gi|1126172621|ref|XP_019618408.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X6 [Branchiostoma belcheri] 9e-79; gi|1126172617|ref|XP_019618406.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X4 [Branchiostoma belcheri] 9e-79; gi|1126172619|ref|XP_019618407.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X5 [Branchiostoma belcheri] 6e-78; gi|1126172613|ref|XP_019618404.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X2 [Branchiostoma belcheri] 6e-78; gi|1126172611|ref|XP_019618403.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X1 [Branchiostoma belcheri] 1e-77; gi|1126172615|ref|XP_019618405.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X3 [Branchiostoma belcheri] 1e-77;
NvERTx.4.181274 R-9 0.99943039528 E-1 0.980591327133 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181275 R-9 0.99943039528 E-1 0.980591327133 P27105 Erythrocyte band 7 integral membrane protein gi|156390662|ref|XP_001635389.1|predicted protein [Nematostella vectensis], 6e-60
other nr_hits gi|999980529|gb|KXJ19703.1|Mechanosensory protein 2 [Exaiptasia pallida] 2e-52; gi|999980486|gb|KXJ19660.1|Mechanosensory protein 2 [Exaiptasia pallida] 3e-52; gi|156390658|ref|XP_001635387.1|predicted protein [Nematostella vectensis] 3e-51; gi|1005457887|ref|XP_015766064.1|PREDICTED: erythrocyte band 7 integral membrane protein-like [Acropora digitifera] 4e-51; gi|1126172619|ref|XP_019618407.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X5 [Branchiostoma belcheri] 2e-47; gi|1126172613|ref|XP_019618404.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X2 [Branchiostoma belcheri] 2e-47; gi|1126172621|ref|XP_019618408.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X6 [Branchiostoma belcheri] 2e-47; gi|1126172617|ref|XP_019618406.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X4 [Branchiostoma belcheri] 2e-47; gi|1126172611|ref|XP_019618403.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X1 [Branchiostoma belcheri] 2e-47;
NvERTx.4.181277 R-9 0.99943039528 E-1 0.980591327133 P27105 Erythrocyte band 7 integral membrane protein gi|156390662|ref|XP_001635389.1|predicted protein [Nematostella vectensis], 3e-74
other nr_hits gi|1005457887|ref|XP_015766064.1|PREDICTED: erythrocyte band 7 integral membrane protein-like [Acropora digitifera] 2e-71; gi|999980529|gb|KXJ19703.1|Mechanosensory protein 2 [Exaiptasia pallida] 3e-71; gi|999980486|gb|KXJ19660.1|Mechanosensory protein 2 [Exaiptasia pallida] 4e-71; gi|1126172621|ref|XP_019618408.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X6 [Branchiostoma belcheri] 3e-67; gi|1126172617|ref|XP_019618406.1|PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X4 [Branchiostoma belcheri] 3e-67; gi|321474933|gb|EFX85897.1|hypothetical protein DAPPUDRAFT_193650 [Daphnia pulex] 6e-67; gi|942415617|gb|JAN89738.1|Erythrocyte band 7 integral membrane protein [Daphnia magna] 7e-67; gi|942307565|gb|JAN35715.1|Erythrocyte band 7 integral membrane protein [Daphnia magna] 7e-67; gi|829999655|ref|XP_004677437.2|PREDICTED: erythrocyte band 7 integral membrane protein [Condylura cristata] 7e-67;
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