#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.58554 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.77242 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.77243 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.78666 R-1 0.657345609225 E-1 0.999999999999 Q9VX98 Density-regulated protein homolog {ECO:0000303|PubMed:25043021} gi|156384920|ref|XP_001633380.1|predicted protein [Nematostella vectensis], 3e-92
other nr_hits gi|999990348|gb|KXJ29372.1|Density-regulated protein [Exaiptasia pallida] 3e-68; gi|1005418954|ref|XP_015777692.1|PREDICTED: density-regulated protein homolog [Acropora digitifera] 3e-56; gi|1036789919|ref|XP_017135918.1|PREDICTED: density-regulated protein homolog [Drosophila miranda] 7e-48; gi|195393934|ref|XP_002055607.1|uncharacterized protein Dvir_GJ18691 [Drosophila virilis] 1e-47; gi|195129986|ref|XP_002009435.1|uncharacterized protein Dmoj_GI15232 [Drosophila mojavensis] 2e-47; gi|125980625|ref|XP_001354336.1|uncharacterized protein Dpse_GA21541 [Drosophila pseudoobscura pseudoobscura] 2e-47; gi|195043765|ref|XP_001991685.1|GH12791 [Drosophila grimshawi] 3e-47; gi|1060261866|ref|XP_017869661.1|PREDICTED: density-regulated protein homolog [Drosophila arizonae] 5e-47; gi|665808412|ref|XP_008552526.1|PREDICTED: density-regulated protein homolog [Microplitis demolitor] 5e-47;
NvERTx.4.78667 R-1 0.657345609225 E-1 0.999999999999 Q9VX98 Density-regulated protein homolog {ECO:0000303|PubMed:25043021} gi|156384920|ref|XP_001633380.1|predicted protein [Nematostella vectensis], 4e-73
other nr_hits gi|999990348|gb|KXJ29372.1|Density-regulated protein [Exaiptasia pallida] 4e-60; gi|1005418954|ref|XP_015777692.1|PREDICTED: density-regulated protein homolog [Acropora digitifera] 1e-48; gi|1036789919|ref|XP_017135918.1|PREDICTED: density-regulated protein homolog [Drosophila miranda] 9e-43; gi|125980625|ref|XP_001354336.1|uncharacterized protein Dpse_GA21541 [Drosophila pseudoobscura pseudoobscura] 3e-42; gi|195393934|ref|XP_002055607.1|uncharacterized protein Dvir_GJ18691 [Drosophila virilis] 6e-42; gi|1037034955|ref|XP_017056241.1|PREDICTED: density-regulated protein homolog [Drosophila ficusphila] 8e-42; gi|1036689363|ref|XP_017025050.1|PREDICTED: density-regulated protein homolog [Drosophila kikkawai] 8e-42; gi|195043765|ref|XP_001991685.1|GH12791 [Drosophila grimshawi] 8e-42; gi|195129986|ref|XP_002009435.1|uncharacterized protein Dmoj_GI15232 [Drosophila mojavensis] 1e-41;
NvERTx.4.97497 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97498 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97499 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97691 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101431 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.107544 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112629 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112913 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112921 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112923 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.112925 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113922 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.118854 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131996 R-1 0.657345609225 E-1 0.999999999999 NA NA None
other nr_hits NA
NvERTx.4.134143 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.134720 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.134736 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.134738 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137688 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137691 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140017 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.143025 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.147191 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.155917 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.155918 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.163120 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.163121 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.174013 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.3985 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181704 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197486 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197488 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197490 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197503 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.197504 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204802 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.217556 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.227058 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.228398 R-1 0.657345609225 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.10685 NA NA E-1 0.999999999999 W4XY90_STRPU Uncharacterized protein {ECO:0000313|EnsemblMetazoa:SPU_008405-tr} gi|1005421449|ref|XP_015761971.1|PREDICTED: uncharacterized protein LOC107341063 [Acropora digitifera], 2e-20
other nr_hits gi|999981089|gb|KXJ20263.1|hypothetical protein AC249_AIPGENE16570 [Exaiptasia pallida] 8e-20; gi|1005426542|ref|XP_015751090.1|PREDICTED: uncharacterized protein LOC107331073 [Acropora digitifera] 2e-19; gi|999973833|gb|KXJ13007.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 6e-17; gi|1005442840|ref|XP_015758761.1|PREDICTED: uncharacterized protein LOC107338026 [Acropora digitifera] 5e-16; gi|1005478960|ref|XP_015776193.1|PREDICTED: uncharacterized protein LOC107354258 [Acropora digitifera] 9e-16; gi|999981871|gb|KXJ21029.1|hypothetical protein AC249_AIPGENE4360 [Exaiptasia pallida] 1e-14; gi|999969966|gb|KXJ09140.1|putative RNA-directed DNA polymerase from transposon X-element [Exaiptasia pallida] 2e-14; gi|999968105|gb|KXJ07279.1|hypothetical protein AC249_AIPGENE19203, partial [Exaiptasia pallida] 3e-14; gi|999975764|gb|KXJ14938.1|putative RNA-directed DNA polymerase from transposon BS [Exaiptasia pallida] 4e-14;
NvERTx.4.10686 NA NA E-1 0.999999999999 R7TRX5_CAPTE Uncharacterized protein {ECO:0000313|EMBL:ELT96317.1, ECO:0000313|EnsemblMetazoa:CapteP189891} gi|1005421449|ref|XP_015761971.1|PREDICTED: uncharacterized protein LOC107341063 [Acropora digitifera], 1e-22
other nr_hits gi|1005426542|ref|XP_015751090.1|PREDICTED: uncharacterized protein LOC107331073 [Acropora digitifera] 5e-19; gi|999976321|gb|KXJ15495.1|putative RNA-directed DNA polymerase from transposon BS [Exaiptasia pallida] 2e-17; gi|999979202|gb|KXJ18376.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 8e-17; gi|999982324|gb|KXJ21474.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 8e-17; gi|999968630|gb|KXJ07804.1|RNA-directed DNA polymerase from mobile element jockey [Exaiptasia pallida] 8e-17; gi|156368969|ref|XP_001627963.1|predicted protein [Nematostella vectensis] 1e-16; gi|999977661|gb|KXJ16835.1|hypothetical protein AC249_AIPGENE22824 [Exaiptasia pallida] 5e-16; gi|999969128|gb|KXJ08302.1|putative RNA-directed DNA polymerase from transposon X-element [Exaiptasia pallida] 5e-16; gi|999980922|gb|KXJ20096.1|putative RNA-directed DNA polymerase from transposon X-element [Exaiptasia pallida] 7e-16;
NvERTx.4.13692 NA NA E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.5109 NA NA E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.226772 NA NA E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.178278 R-6 0.984671712114 E-1 0.999999999999 No_Uniprotmatch No_Description None
other nr_hits NA
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