#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.71571 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76802 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.76803 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84933 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84943 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.84944 R-2 0.492212387262 E-1 0.998331233005 Q5ZLD2 DEP domain-containing protein 1B gi|156382567|ref|XP_001632624.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999981677|gb|KXJ20851.1|DEP domain-containing protein 1B [Exaiptasia pallida] 2e-166; gi|585659440|ref|XP_006816188.1|PREDICTED: DEP domain-containing protein 1B-like isoform X1 [Saccoglossus kowalevskii] 7e-74; gi|585659444|ref|XP_006816189.1|PREDICTED: DEP domain-containing protein 1B-like isoform X2 [Saccoglossus kowalevskii] 1e-73; gi|641695237|ref|XP_008160068.1|PREDICTED: DEP domain-containing protein 1B isoform X1 [Eptesicus fuscus] 3e-68; gi|61098398|ref|NP_001012946.1|DEP domain-containing protein 1A [Gallus gallus] 6e-68; gi|1121821089|ref|XP_019387155.1|PREDICTED: DEP domain-containing protein 1A isoform X2 [Crocodylus porosus] 7e-68; gi|558097561|ref|XP_006081490.1|PREDICTED: DEP domain-containing protein 1B isoform X1 [Myotis lucifugus] 7e-68; gi|586541934|ref|XP_006906108.1|PREDICTED: DEP domain-containing protein 1B [Pteropus alecto] 7e-68; gi|507936302|ref|XP_004679167.1|PREDICTED: DEP domain-containing protein 1A isoform X2 [Condylura cristata] 1e-67;
NvERTx.4.106296 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.127938 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.131890 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.135288 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.135289 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156463 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.159928 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170534 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171478 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.175665 R-2 0.492212387262 E-1 0.998331233005 NA NA None
other nr_hits NA
NvERTx.4.175666 R-2 0.492212387262 E-1 0.998331233005 NA NA None
other nr_hits NA
NvERTx.4.175669 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177550 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177551 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177555 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.177557 R-2 0.492212387262 E-1 0.998331233005 Q96MB7 Putative nuclease HARBI1 gi|1005432607|ref|XP_015753868.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera], 3e-21
other nr_hits gi|1005470087|ref|XP_015771926.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 2e-20; gi|1005484513|ref|XP_015778896.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 1e-16; gi|1005482540|ref|XP_015777960.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 1e-14; gi|1139853978|ref|XP_019921100.1|PREDICTED: putative nuclease HARBI1 [Crassostrea gigas] 4e-14; gi|1005491478|ref|XP_015748414.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 1e-13; gi|1005466433|ref|XP_015770195.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 2e-13; gi|1005420830|ref|XP_015759021.1|PREDICTED: putative nuclease HARBI1 [Acropora digitifera] 3e-13; gi|919084479|ref|XP_013379511.1|PREDICTED: putative nuclease HARBI1 [Lingula anatina] 4e-12; gi|919004744|ref|XP_013381198.1|PREDICTED: putative nuclease HARBI1 [Lingula anatina] 3e-11;
NvERTx.4.177556 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185653 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185654 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185655 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185657 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185658 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185659 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185661 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185662 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.185663 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.199933 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202720 R-2 0.492212387262 E-1 0.998331233005 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.6481 R-6 0.99530713733 E-1 0.998328193421 O15439 Multidrug resistance-associated protein 4 gi|156376541|ref|XP_001630418.1|predicted protein [Nematostella vectensis], 7e-12
other nr_hits gi|999982400|gb|KXJ21550.1|Multidrug resistance-associated protein 4 [Exaiptasia pallida] 2e-08; gi|156376539|ref|XP_001630417.1|predicted protein [Nematostella vectensis] 9e-07; gi|1005471773|ref|XP_015772752.1|PREDICTED: multidrug resistance-associated protein 4-like [Acropora digitifera] 3e-06; gi|1005485867|ref|XP_015779531.1|PREDICTED: multidrug resistance-associated protein 4-like [Acropora digitifera] 3e-06;
NvERTx.4.100334 R-6 0.99530713733 E-1 0.998328193421 O15439 Multidrug resistance-associated protein 4 gi|156376541|ref|XP_001630418.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999982400|gb|KXJ21550.1|Multidrug resistance-associated protein 4 [Exaiptasia pallida] 4e-253; gi|156376539|ref|XP_001630417.1|predicted protein [Nematostella vectensis] 1e-226; gi|1005471773|ref|XP_015772752.1|PREDICTED: multidrug resistance-associated protein 4-like [Acropora digitifera] 6e-212; gi|1051187342|ref|XP_017676579.1|PREDICTED: multidrug resistance-associated protein 4 isoform X1 [Lepidothrix coronata] 9e-198; gi|1003733572|ref|XP_015707033.1|PREDICTED: multidrug resistance-associated protein 4 [Coturnix japonica] 9e-198; gi|1069327567|ref|XP_018102737.1|PREDICTED: multidrug resistance-associated protein 4-like [Xenopus laevis] 1e-197; gi|512821621|ref|XP_002939329.2|PREDICTED: multidrug resistance-associated protein 4 [Xenopus tropicalis] 3e-197; gi|543339350|ref|XP_005516500.1|PREDICTED: multidrug resistance-associated protein 4 isoform X1 [Pseudopodoces humilis] 3e-197; gi|1099003284|ref|XP_018861628.1|PREDICTED: multidrug resistance-associated protein 4 isoform X3 [Parus major] 7e-197;
NvERTx.4.100339 R-6 0.99530713733 E-1 0.998328193421 O15439 Multidrug resistance-associated protein 4 gi|156376541|ref|XP_001630418.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999982400|gb|KXJ21550.1|Multidrug resistance-associated protein 4 [Exaiptasia pallida] 3e-253; gi|156376539|ref|XP_001630417.1|predicted protein [Nematostella vectensis] 1e-184; gi|1005471773|ref|XP_015772752.1|PREDICTED: multidrug resistance-associated protein 4-like [Acropora digitifera] 9e-174; gi|1099003284|ref|XP_018861628.1|PREDICTED: multidrug resistance-associated protein 4 isoform X3 [Parus major] 7e-169; gi|998655865|ref|XP_015476086.1|PREDICTED: multidrug resistance-associated protein 4 isoform X1 [Parus major] 7e-169; gi|998655867|ref|XP_015476089.1|PREDICTED: multidrug resistance-associated protein 4 isoform X2 [Parus major] 7e-169; gi|543339350|ref|XP_005516500.1|PREDICTED: multidrug resistance-associated protein 4 isoform X1 [Pseudopodoces humilis] 7e-169; gi|719767099|ref|XP_010217934.1|PREDICTED: multidrug resistance-associated protein 4, partial [Tinamus guttatus] 1e-168; gi|617442161|ref|XP_007565491.1|PREDICTED: multidrug resistance-associated protein 4 [Poecilia formosa] 3e-168;
NvERTx.4.100347 R-6 0.99530713733 E-1 0.998328193421 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126545 R-6 0.99530713733 E-1 0.998328193421 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126547 R-6 0.99530713733 E-1 0.998328193421 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.137070 R-6 0.99530713733 E-1 0.998328193421 O15439 Multidrug resistance-associated protein 4 gi|156376541|ref|XP_001630418.1|predicted protein [Nematostella vectensis], 1e-229
other nr_hits gi|156376539|ref|XP_001630417.1|predicted protein [Nematostella vectensis] 1e-189; gi|999990919|gb|KXJ29937.1|Multidrug resistance-associated protein 4 [Exaiptasia pallida] 6e-140; gi|919046681|ref|XP_013406517.1|PREDICTED: multidrug resistance-associated protein 4-like isoform X1 [Lingula anatina] 2e-138; gi|919046683|ref|XP_013406518.1|PREDICTED: multidrug resistance-associated protein 4-like isoform X2 [Lingula anatina] 2e-138; gi|919046685|ref|XP_013406519.1|PREDICTED: multidrug resistance-associated protein 4-like isoform X3 [Lingula anatina] 2e-138; gi|999982400|gb|KXJ21550.1|Multidrug resistance-associated protein 4 [Exaiptasia pallida] 2e-136; gi|999982417|gb|KXJ21567.1|Multidrug resistance-associated protein 4 [Exaiptasia pallida] 2e-136; gi|657552651|ref|XP_008280705.1|PREDICTED: multidrug resistance-associated protein 4-like [Stegastes partitus] 2e-135; gi|1049257478|ref|XP_017568412.1|PREDICTED: multidrug resistance-associated protein 4 [Pygocentrus nattereri] 8e-135;
NvERTx.4.138478 R-8 0.38758278571 E-1 0.998326192951 No_Uniprotmatch No_Description gi|999979322|gb|KXJ18496.1|Calcium-dependent protein kinase 26 [Exaiptasia pallida], 8e-39
other nr_hits gi|156371244|ref|XP_001628675.1|predicted protein [Nematostella vectensis] 1e-14;
NvERTx.4.138479 R-8 0.38758278571 E-1 0.998326192951 Q06850 Calcium-dependent protein kinase 1 gi|156371244|ref|XP_001628675.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999979322|gb|KXJ18496.1|Calcium-dependent protein kinase 26 [Exaiptasia pallida] 1e-196; gi|1005437837|ref|XP_015756350.1|PREDICTED: uncharacterized protein LOC107335824 [Acropora digitifera] 3e-137; gi|260805541|ref|XP_002597645.1|hypothetical protein BRAFLDRAFT_121691 [Branchiostoma floridae] 3e-39; gi|1126213089|ref|XP_019640400.1|PREDICTED: uncharacterized protein LOC109482140 [Branchiostoma belcheri] 3e-36; gi|780074404|ref|XP_011671974.1|PREDICTED: uncharacterized protein LOC100889312 isoform X1 [Strongylocentrotus purpuratus] 3e-35; gi|780074459|ref|XP_011671986.1|PREDICTED: uncharacterized protein LOC100889312 isoform X2 [Strongylocentrotus purpuratus] 3e-35; gi|780074464|ref|XP_011671987.1|PREDICTED: uncharacterized protein LOC100889312 isoform X3 [Strongylocentrotus purpuratus] 3e-35; gi|196004474|ref|XP_002112104.1|hypothetical protein TRIADDRAFT_55804 [Trichoplax adhaerens] 2e-27; gi|1139842502|ref|XP_011413046.2|PREDICTED: uncharacterized protein LOC105317929 isoform X3 [Crassostrea gigas] 9e-13;
NvERTx.4.88480 R-6 0.999996104841 E-1 0.998324359894 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.155775 R-6 0.999996104841 E-1 0.998324359894 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.170719 R-6 0.999996104841 E-1 0.998324359894 Q6VMQ6 Activating transcription factor 7-interacting protein 1 gi|156342999|ref|XP_001621002.1|hypothetical protein NEMVEDRAFT_v1g233838 [Nematostella vectensis], 4e-172
other nr_hits gi|156395175|ref|XP_001636987.1|predicted protein [Nematostella vectensis] 2e-163; gi|1005432463|ref|XP_015753803.1|PREDICTED: activating transcription factor 7-interacting protein 1-like [Acropora digitifera] 1e-29; gi|999989482|gb|KXJ28518.1|Activating transcription factor 7-interacting protein 1 [Exaiptasia pallida] 1e-28; gi|918330573|gb|KOF94576.1|hypothetical protein OCBIM_22001457mg [Octopus bimaculoides] 3e-23; gi|961079790|ref|XP_014768089.1|PREDICTED: activating transcription factor 7-interacting protein 1-like [Octopus bimaculoides] 3e-23; gi|242004622|ref|XP_002423179.1|ubiquitin-protein ligase BRE1, putative [Pediculus humanus corporis] 1e-22; gi|156380635|ref|XP_001631873.1|predicted protein [Nematostella vectensis] 2e-22; gi|1153818067|ref|XP_020285052.1|CAR1 transcription factor isoform X2 [Pseudomyrmex gracilis] 9e-22; gi|1153818063|ref|XP_020285049.1|CAR1 transcription factor isoform X1 [Pseudomyrmex gracilis] 9e-22;
NvERTx.4.170720 R-6 0.999996104841 E-1 0.998324359894 Q6VMQ6 Activating transcription factor 7-interacting protein 1 gi|156342999|ref|XP_001621002.1|hypothetical protein NEMVEDRAFT_v1g233838 [Nematostella vectensis], 4e-172
other nr_hits gi|156395175|ref|XP_001636987.1|predicted protein [Nematostella vectensis] 2e-163; gi|1005432463|ref|XP_015753803.1|PREDICTED: activating transcription factor 7-interacting protein 1-like [Acropora digitifera] 1e-29; gi|999989482|gb|KXJ28518.1|Activating transcription factor 7-interacting protein 1 [Exaiptasia pallida] 1e-28; gi|918330573|gb|KOF94576.1|hypothetical protein OCBIM_22001457mg [Octopus bimaculoides] 3e-23; gi|961079790|ref|XP_014768089.1|PREDICTED: activating transcription factor 7-interacting protein 1-like [Octopus bimaculoides] 3e-23; gi|242004622|ref|XP_002423179.1|ubiquitin-protein ligase BRE1, putative [Pediculus humanus corporis] 1e-22; gi|156380635|ref|XP_001631873.1|predicted protein [Nematostella vectensis] 2e-22; gi|1153818067|ref|XP_020285052.1|CAR1 transcription factor isoform X2 [Pseudomyrmex gracilis] 9e-22; gi|1153818063|ref|XP_020285049.1|CAR1 transcription factor isoform X1 [Pseudomyrmex gracilis] 9e-22;
NvERTx.4.170721 R-6 0.999996104841 E-1 0.998324359894 No_Uniprotmatch No_Description gi|156395175|ref|XP_001636987.1|predicted protein [Nematostella vectensis], 1e-96
other nr_hits gi|156342999|ref|XP_001621002.1|hypothetical protein NEMVEDRAFT_v1g233838 [Nematostella vectensis] 4e-96; gi|999989482|gb|KXJ28518.1|Activating transcription factor 7-interacting protein 1 [Exaiptasia pallida] 5e-16;
NvERTx.4.170724 R-6 0.999996104841 E-1 0.998324359894 Q5ZIE8 Activating transcription factor 7-interacting protein 1 gi|156342999|ref|XP_001621002.1|hypothetical protein NEMVEDRAFT_v1g233838 [Nematostella vectensis], 4e-172
other nr_hits gi|156395175|ref|XP_001636987.1|predicted protein [Nematostella vectensis] 2e-163; gi|1005432463|ref|XP_015753803.1|PREDICTED: activating transcription factor 7-interacting protein 1-like [Acropora digitifera] 1e-29; gi|999989482|gb|KXJ28518.1|Activating transcription factor 7-interacting protein 1 [Exaiptasia pallida] 8e-29; gi|918330573|gb|KOF94576.1|hypothetical protein OCBIM_22001457mg [Octopus bimaculoides] 3e-23; gi|961079790|ref|XP_014768089.1|PREDICTED: activating transcription factor 7-interacting protein 1-like [Octopus bimaculoides] 3e-23; gi|242004622|ref|XP_002423179.1|ubiquitin-protein ligase BRE1, putative [Pediculus humanus corporis] 1e-22; gi|156380635|ref|XP_001631873.1|predicted protein [Nematostella vectensis] 2e-22; gi|1153818067|ref|XP_020285052.1|CAR1 transcription factor isoform X2 [Pseudomyrmex gracilis] 9e-22; gi|1153818063|ref|XP_020285049.1|CAR1 transcription factor isoform X1 [Pseudomyrmex gracilis] 9e-22;
NvERTx.4.170725 R-6 0.999996104841 E-1 0.998324359894 No_Uniprotmatch No_Description None
other nr_hits NA
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