#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.123163 R-7 0.715494782999 E-1 0.999880176332 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166727 R-7 0.715494782999 E-1 0.999880176332 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.166728 R-7 0.715494782999 E-1 0.999880176332 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188799 R-7 0.715494782999 E-1 0.999880176332 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.226141 R-7 0.715494782999 E-1 0.999880176332 Q5ZKI6 Glucoside xylosyltransferase 1 gi|156379954|ref|XP_001631720.1|predicted protein [Nematostella vectensis], 2e-30
other nr_hits gi|999989940|gb|KXJ28970.1|Glucoside xylosyltransferase 2 [Exaiptasia pallida] 8e-11; gi|1005434906|ref|XP_015754956.1|PREDICTED: glucoside xylosyltransferase 2-like [Acropora digitifera] 1e-09; gi|1126217424|ref|XP_019642762.1|PREDICTED: glucoside xylosyltransferase 1-like isoform X1 [Branchiostoma belcheri] 4e-09; gi|1126217428|ref|XP_019642764.1|PREDICTED: glucoside xylosyltransferase 2-like isoform X3 [Branchiostoma belcheri] 4e-09; gi|831277408|ref|XP_012697901.1|PREDICTED: glucoside xylosyltransferase 1-like isoform X1 [Clupea harengus] 9e-09; gi|831277410|ref|XP_012697902.1|PREDICTED: glucoside xylosyltransferase 1-like isoform X2 [Clupea harengus] 9e-09; gi|597762231|ref|XP_007245087.1|PREDICTED: glucoside xylosyltransferase 1-like [Astyanax mexicanus] 2e-08; gi|831306940|ref|XP_012685716.1|PREDICTED: glucoside xylosyltransferase 1 [Clupea harengus] 3e-08; gi|962011572|ref|XP_014831400.1|PREDICTED: glucoside xylosyltransferase 1-like isoform X1 [Poecilia mexicana] 4e-08;
NvERTx.4.9545 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.34107 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.34333 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.53224 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.53227 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.62196 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.62197 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.79643 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.83188 R-7 0.999582257516 E-1 0.999879123887 NA NA None
other nr_hits NA
NvERTx.4.87383 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.92106 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96107 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.96108 R-7 0.999582257516 E-1 0.999879123887 Q66PY1 Signal peptide, CUB and EGF-like domain-containing protein 3 gi|1005441879|ref|XP_015758267.1|PREDICTED: uncharacterized protein LOC107337575 [Acropora digitifera], 4e-43
other nr_hits gi|470325484|ref|XP_004364469.1|hypothetical protein CAOG_01601 [Capsaspora owczarzaki ATCC 30864] 9e-20; gi|471193134|ref|XP_004253644.1|protein serine/threonine kinase, putative [Entamoeba invadens IP1] 1e-10; gi|630972176|ref|XP_007882496.1|hypothetical protein PFL1_06759 [Anthracocystis flocculosa PF-1] 2e-10; gi|471197188|ref|XP_004255523.1|E-selectin precursor, putative [Entamoeba invadens IP1] 3e-10; gi|471190336|ref|XP_004184886.1|hypothetical protein EIN_148920, partial [Entamoeba invadens IP1] 3e-10; gi|1126170165|ref|XP_019617061.1|PREDICTED: uncharacterized protein LOC109464494 [Branchiostoma belcheri] 4e-10; gi|1051186668|ref|XP_017676222.1|PREDICTED: flocculation protein FLO11-like [Lepidothrix coronata] 4e-10; gi|260809656|ref|XP_002599621.1|hypothetical protein BRAFLDRAFT_77720 [Branchiostoma floridae] 1e-09; gi|471186243|ref|XP_004182944.1|protein serine/threonine kinase, putative [Entamoeba invadens IP1] 1e-09;
NvERTx.4.96109 R-7 0.999582257516 E-1 0.999879123887 Q66PY1 Signal peptide, CUB and EGF-like domain-containing protein 3 gi|1005441879|ref|XP_015758267.1|PREDICTED: uncharacterized protein LOC107337575 [Acropora digitifera], 3e-40
other nr_hits gi|470325484|ref|XP_004364469.1|hypothetical protein CAOG_01601 [Capsaspora owczarzaki ATCC 30864] 2e-11; gi|471193134|ref|XP_004253644.1|protein serine/threonine kinase, putative [Entamoeba invadens IP1] 8e-11; gi|630972176|ref|XP_007882496.1|hypothetical protein PFL1_06759 [Anthracocystis flocculosa PF-1] 1e-10; gi|471197188|ref|XP_004255523.1|E-selectin precursor, putative [Entamoeba invadens IP1] 2e-10; gi|471190336|ref|XP_004184886.1|hypothetical protein EIN_148920, partial [Entamoeba invadens IP1] 2e-10; gi|1126170165|ref|XP_019617061.1|PREDICTED: uncharacterized protein LOC109464494 [Branchiostoma belcheri] 2e-10; gi|1051186668|ref|XP_017676222.1|PREDICTED: flocculation protein FLO11-like [Lepidothrix coronata] 2e-10; gi|260809656|ref|XP_002599621.1|hypothetical protein BRAFLDRAFT_77720 [Branchiostoma floridae] 6e-10; gi|471186243|ref|XP_004182944.1|protein serine/threonine kinase, putative [Entamoeba invadens IP1] 8e-10;
NvERTx.4.96565 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97623 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101839 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.104855 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.108144 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111222 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111901 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.120095 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.120099 R-7 0.999582257516 E-1 0.999879123887 A0A023EE51_AEDAL Putative insect protein {ECO:0000313|EMBL:JAC07612.1} gi|156376415|ref|XP_001630356.1|predicted protein [Nematostella vectensis], 1e-62
other nr_hits gi|999969917|gb|KXJ09091.1|hypothetical protein AC249_AIPGENE23408 [Exaiptasia pallida] 5e-29; gi|1005474804|ref|XP_015774173.1|PREDICTED: uncharacterized protein LOC107352348 [Acropora digitifera] 6e-24; gi|957846263|ref|XP_014673591.1|PREDICTED: uncharacterized protein LOC106813865 [Priapulus caudatus] 3e-08; gi|604770323|gb|JAC07612.1|putative insect protein, partial [Aedes albopictus] 2e-07; gi|1121158832|ref|XP_019525289.1|PREDICTED: uncharacterized protein LOC109397424 [Aedes albopictus] 2e-07; gi|1126175592|ref|XP_019620028.1|PREDICTED: uncharacterized protein LOC109466711 [Branchiostoma belcheri] 4e-07; gi|961134234|ref|XP_014787104.1|PREDICTED: uncharacterized protein LOC106881286 [Octopus bimaculoides] 4e-07; gi|919089793|ref|XP_013381927.1|PREDICTED: uncharacterized protein LOC106152757 isoform X1 [Lingula anatina] 5e-07; gi|919089795|ref|XP_013381928.1|PREDICTED: uncharacterized protein LOC106152757 isoform X2 [Lingula anatina] 5e-07;
NvERTx.4.120100 R-7 0.999582257516 E-1 0.999879123887 A0A023EE51_AEDAL Putative insect protein {ECO:0000313|EMBL:JAC07612.1} gi|156376415|ref|XP_001630356.1|predicted protein [Nematostella vectensis], 1e-62
other nr_hits gi|999969917|gb|KXJ09091.1|hypothetical protein AC249_AIPGENE23408 [Exaiptasia pallida] 5e-29; gi|1005474804|ref|XP_015774173.1|PREDICTED: uncharacterized protein LOC107352348 [Acropora digitifera] 6e-24; gi|957846263|ref|XP_014673591.1|PREDICTED: uncharacterized protein LOC106813865 [Priapulus caudatus] 3e-08; gi|604770323|gb|JAC07612.1|putative insect protein, partial [Aedes albopictus] 2e-07; gi|1121158832|ref|XP_019525289.1|PREDICTED: uncharacterized protein LOC109397424 [Aedes albopictus] 2e-07; gi|1126175592|ref|XP_019620028.1|PREDICTED: uncharacterized protein LOC109466711 [Branchiostoma belcheri] 4e-07; gi|961134234|ref|XP_014787104.1|PREDICTED: uncharacterized protein LOC106881286 [Octopus bimaculoides] 4e-07; gi|919089793|ref|XP_013381927.1|PREDICTED: uncharacterized protein LOC106152757 isoform X1 [Lingula anatina] 5e-07; gi|919089795|ref|XP_013381928.1|PREDICTED: uncharacterized protein LOC106152757 isoform X2 [Lingula anatina] 5e-07;
NvERTx.4.153251 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153252 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153228 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.153229 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158831 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.169526 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.178258 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.187683 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194171 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194172 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.194173 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.195689 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.201572 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.5181 R-7 0.999582257516 E-1 0.999879123887 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.91267 R-4 0.908665032481 E-1 0.999878758887 No_Uniprotmatch No_Description gi|156392297|ref|XP_001635985.1|predicted protein [Nematostella vectensis], 5e-223
other nr_hits gi|999972527|gb|KXJ11701.1|hypothetical protein AC249_AIPGENE10726 [Exaiptasia pallida] 5e-17; gi|1005447330|ref|XP_015760952.1|PREDICTED: uncharacterized protein LOC107340114 [Acropora digitifera] 2e-15; gi|156403957|ref|XP_001640174.1|predicted protein [Nematostella vectensis] 3e-08;
NvERTx.4.91268 R-4 0.908665032481 E-1 0.999878758887 P21138 Serine-rich 25 kDa antigen protein gi|156392297|ref|XP_001635985.1|predicted protein [Nematostella vectensis], 2e-222
other nr_hits gi|999972527|gb|KXJ11701.1|hypothetical protein AC249_AIPGENE10726 [Exaiptasia pallida] 6e-17; gi|1005447330|ref|XP_015760952.1|PREDICTED: uncharacterized protein LOC107340114 [Acropora digitifera] 2e-15; gi|156403957|ref|XP_001640174.1|predicted protein [Nematostella vectensis] 3e-08;
NvERTx.4.60233 R-5 0.890268611755 E-1 0.999877498724 Q8BGC4 Prostaglandin reductase-3 {ECO:0000303|PubMed:23821743} gi|156405533|ref|XP_001640786.1|predicted protein [Nematostella vectensis], 6e-177
other nr_hits gi|999971634|gb|KXJ10808.1|Zinc-binding alcohol dehydrogenase domain-containing protein 2 [Exaiptasia pallida] 7e-117; gi|919047129|ref|XP_013406757.1|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Lingula anatina] 5e-96; gi|1126223854|ref|XP_019646251.1|PREDICTED: prostaglandin reductase-3-like isoform X1 [Branchiostoma belcheri] 6e-96; gi|1126223856|ref|XP_019646252.1|PREDICTED: prostaglandin reductase-3-like isoform X2 [Branchiostoma belcheri] 6e-96; gi|919033482|ref|XP_013400434.1|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Lingula anatina] 6e-96; gi|676443772|ref|XP_009050216.1|hypothetical protein LOTGIDRAFT_201415 [Lottia gigantea] 6e-94; gi|443713664|gb|ELU06398.1|hypothetical protein CAPTEDRAFT_173764 [Capitella teleta] 8e-94; gi|1108992605|ref|XP_010728449.2|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2 [Larimichthys crocea] 4e-92; gi|1005441534|ref|XP_015758093.1|PREDICTED: LOW QUALITY PROTEIN: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Acropora digitifera] 6e-92;
NvERTx.4.60234 R-5 0.890268611755 E-1 0.999877498724 Q8BGC4 Prostaglandin reductase-3 {ECO:0000303|PubMed:23821743} gi|156405533|ref|XP_001640786.1|predicted protein [Nematostella vectensis], 6e-177
other nr_hits gi|999971634|gb|KXJ10808.1|Zinc-binding alcohol dehydrogenase domain-containing protein 2 [Exaiptasia pallida] 7e-117; gi|919047129|ref|XP_013406757.1|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Lingula anatina] 5e-96; gi|1126223854|ref|XP_019646251.1|PREDICTED: prostaglandin reductase-3-like isoform X1 [Branchiostoma belcheri] 6e-96; gi|1126223856|ref|XP_019646252.1|PREDICTED: prostaglandin reductase-3-like isoform X2 [Branchiostoma belcheri] 6e-96; gi|919033482|ref|XP_013400434.1|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Lingula anatina] 6e-96; gi|676443772|ref|XP_009050216.1|hypothetical protein LOTGIDRAFT_201415 [Lottia gigantea] 6e-94; gi|443713664|gb|ELU06398.1|hypothetical protein CAPTEDRAFT_173764 [Capitella teleta] 8e-94; gi|1108992605|ref|XP_010728449.2|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2 [Larimichthys crocea] 4e-92; gi|1005441534|ref|XP_015758093.1|PREDICTED: LOW QUALITY PROTEIN: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Acropora digitifera] 6e-92;
NvERTx.4.60237 R-5 0.890268611755 E-1 0.999877498724 Q8BGC4 Prostaglandin reductase-3 {ECO:0000303|PubMed:23821743} gi|156405533|ref|XP_001640786.1|predicted protein [Nematostella vectensis], 2e-189
other nr_hits gi|999971634|gb|KXJ10808.1|Zinc-binding alcohol dehydrogenase domain-containing protein 2 [Exaiptasia pallida] 9e-123; gi|919047129|ref|XP_013406757.1|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Lingula anatina] 8e-103; gi|676443772|ref|XP_009050216.1|hypothetical protein LOTGIDRAFT_201415 [Lottia gigantea] 8e-103; gi|919033482|ref|XP_013400434.1|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Lingula anatina] 1e-102; gi|1126223854|ref|XP_019646251.1|PREDICTED: prostaglandin reductase-3-like isoform X1 [Branchiostoma belcheri] 5e-102; gi|1126223856|ref|XP_019646252.1|PREDICTED: prostaglandin reductase-3-like isoform X2 [Branchiostoma belcheri] 5e-102; gi|443713664|gb|ELU06398.1|hypothetical protein CAPTEDRAFT_173764 [Capitella teleta] 2e-99; gi|736217233|ref|XP_010778883.1|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2 [Notothenia coriiceps] 1e-98; gi|1108992605|ref|XP_010728449.2|PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2 [Larimichthys crocea] 2e-98;
NvERTx.4.65240 R-5 0.985127773779 E-1 0.999876706489 Q5M9G0 Deoxycytidylate deaminase gi|156372900|ref|XP_001629273.1|predicted protein [Nematostella vectensis], 3e-118
other nr_hits gi|999971816|gb|KXJ10990.1|Deoxycytidylate deaminase [Exaiptasia pallida] 7e-79; gi|1005452007|ref|XP_015763150.1|PREDICTED: deoxycytidylate deaminase-like [Acropora digitifera] 1e-76; gi|1079716731|ref|XP_018516063.1|PREDICTED: deoxycytidylate deaminase [Lates calcarifer] 7e-75; gi|961896952|ref|XP_014902041.1|PREDICTED: deoxycytidylate deaminase-like [Poecilia latipinna] 1e-74; gi|929080265|ref|XP_014050557.1|PREDICTED: deoxycytidylate deaminase-like isoform X1 [Salmo salar] 1e-74; gi|617439841|ref|XP_007564689.1|PREDICTED: deoxycytidylate deaminase-like isoform X2 [Poecilia formosa] 2e-74; gi|1158896535|ref|XP_020352919.1|deoxycytidylate deaminase [Oncorhynchus kisutch] 2e-74; gi|209732624|gb|ACI67181.1|Deoxycytidylate deaminase [Salmo salar] 2e-74; gi|657591070|ref|XP_008300001.1|PREDICTED: deoxycytidylate deaminase isoform X1 [Stegastes partitus] 3e-74;
NvERTx.4.101024 R-5 0.472708217761 E-1 0.999875795836 No_Uniprotmatch No_Description None
other nr_hits NA
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