#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.76683 R-2 0.637115451974 E-1 0.999992961361 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126407 R-3 0.998538140054 E-1 0.999992934915 O15068 Guanine nucleotide exchange factor DBS gi|156358234|ref|XP_001624428.1|predicted protein [Nematostella vectensis], 0e+00
other nr_hits gi|999981236|gb|KXJ20410.1|Guanine nucleotide exchange factor DBS [Exaiptasia pallida] 4e-299; gi|1005438419|ref|XP_015756613.1|PREDICTED: guanine nucleotide exchange factor DBS-like [Acropora digitifera] 1e-166; gi|585642831|ref|XP_006811250.1|PREDICTED: guanine nucleotide exchange factor DBS-like [Saccoglossus kowalevskii] 3e-166; gi|908489187|ref|XP_013094761.1|PREDICTED: guanine nucleotide exchange factor DBS-like isoform X1 [Biomphalaria glabrata] 2e-160; gi|908489189|ref|XP_013094762.1|PREDICTED: guanine nucleotide exchange factor DBS-like isoform X2 [Biomphalaria glabrata] 2e-160; gi|908489192|ref|XP_013094763.1|PREDICTED: guanine nucleotide exchange factor DBS-like isoform X3 [Biomphalaria glabrata] 2e-160; gi|908489195|ref|XP_013094764.1|PREDICTED: guanine nucleotide exchange factor DBS-like isoform X4 [Biomphalaria glabrata] 2e-160; gi|929121095|ref|XP_014072192.1|PREDICTED: guanine nucleotide exchange factor DBS-like isoform X9 [Salmo salar] 3e-160; gi|929295151|ref|XP_014024889.1|PREDICTED: guanine nucleotide exchange factor DBS-like isoform X11 [Salmo salar] 2e-159;
NvERTx.4.36366 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.36367 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.61966 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.79928 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106467 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106471 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106478 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106479 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111628 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111636 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.114019 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121939 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121940 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141990 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141991 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141992 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141993 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.141994 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165234 R-6 0.993232642261 E-1 0.999992903782 Q6ZPY7 Lysine-specific demethylase 3B gi|156382131|ref|XP_001632408.1|predicted protein [Nematostella vectensis], 4e-306
other nr_hits gi|999974535|gb|KXJ13709.1|Lysine-specific demethylase 3B [Exaiptasia pallida] 9e-185; gi|1005450737|ref|XP_015762571.1|PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 3B-like [Acropora digitifera] 4e-164; gi|961109765|ref|XP_014778469.1|PREDICTED: lysine-specific demethylase 3A-like isoform X2 [Octopus bimaculoides] 8e-139; gi|961109768|ref|XP_014778470.1|PREDICTED: lysine-specific demethylase 3A-like isoform X3 [Octopus bimaculoides] 8e-139; gi|961109771|ref|XP_014778471.1|PREDICTED: lysine-specific demethylase 3A-like isoform X4 [Octopus bimaculoides] 8e-139; gi|961109762|ref|XP_014778468.1|PREDICTED: lysine-specific demethylase 3A-like isoform X1 [Octopus bimaculoides] 8e-139; gi|908405837|ref|XP_013090238.1|PREDICTED: lysine-specific demethylase 3B-like isoform X1 [Biomphalaria glabrata] 1e-138; gi|908405839|ref|XP_013090245.1|PREDICTED: lysine-specific demethylase 3B-like isoform X2 [Biomphalaria glabrata] 1e-138; gi|908405841|ref|XP_013090252.1|PREDICTED: lysine-specific demethylase 3A-like isoform X3 [Biomphalaria glabrata] 1e-138;
NvERTx.4.165235 R-6 0.993232642261 E-1 0.999992903782 Q6ZPY7 Lysine-specific demethylase 3B gi|156382131|ref|XP_001632408.1|predicted protein [Nematostella vectensis], 4e-306
other nr_hits gi|999974535|gb|KXJ13709.1|Lysine-specific demethylase 3B [Exaiptasia pallida] 9e-185; gi|1005450737|ref|XP_015762571.1|PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 3B-like [Acropora digitifera] 4e-164; gi|961109765|ref|XP_014778469.1|PREDICTED: lysine-specific demethylase 3A-like isoform X2 [Octopus bimaculoides] 8e-139; gi|961109768|ref|XP_014778470.1|PREDICTED: lysine-specific demethylase 3A-like isoform X3 [Octopus bimaculoides] 8e-139; gi|961109771|ref|XP_014778471.1|PREDICTED: lysine-specific demethylase 3A-like isoform X4 [Octopus bimaculoides] 8e-139; gi|961109762|ref|XP_014778468.1|PREDICTED: lysine-specific demethylase 3A-like isoform X1 [Octopus bimaculoides] 8e-139; gi|908405837|ref|XP_013090238.1|PREDICTED: lysine-specific demethylase 3B-like isoform X1 [Biomphalaria glabrata] 1e-138; gi|908405839|ref|XP_013090245.1|PREDICTED: lysine-specific demethylase 3B-like isoform X2 [Biomphalaria glabrata] 1e-138; gi|908405841|ref|XP_013090252.1|PREDICTED: lysine-specific demethylase 3A-like isoform X3 [Biomphalaria glabrata] 1e-138;
NvERTx.4.165236 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.165238 R-6 0.993232642261 E-1 0.999992903782 Q7LBC6 Lysine-specific demethylase 3B gi|156382131|ref|XP_001632408.1|predicted protein [Nematostella vectensis], 2e-232
other nr_hits gi|999974535|gb|KXJ13709.1|Lysine-specific demethylase 3B [Exaiptasia pallida] 5e-125; gi|1005450737|ref|XP_015762571.1|PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 3B-like [Acropora digitifera] 3e-108; gi|762122162|ref|XP_011444025.1|PREDICTED: probable JmjC domain-containing histone demethylation protein 2C isoform X1 [Crassostrea gigas] 7e-91; gi|762122164|ref|XP_011444026.1|PREDICTED: probable JmjC domain-containing histone demethylation protein 2C isoform X2 [Crassostrea gigas] 7e-91; gi|762122166|ref|XP_011444027.1|PREDICTED: lysine-specific demethylase 3A isoform X3 [Crassostrea gigas] 7e-91; gi|405959000|gb|EKC25077.1|Lysine-specific demethylase 3B [Crassostrea gigas] 7e-91; gi|908405837|ref|XP_013090238.1|PREDICTED: lysine-specific demethylase 3B-like isoform X1 [Biomphalaria glabrata] 1e-90; gi|908405839|ref|XP_013090245.1|PREDICTED: lysine-specific demethylase 3B-like isoform X2 [Biomphalaria glabrata] 1e-90; gi|908405841|ref|XP_013090252.1|PREDICTED: lysine-specific demethylase 3A-like isoform X3 [Biomphalaria glabrata] 1e-90;
NvERTx.4.170030 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180964 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180966 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.180967 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204201 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204210 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204211 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204202 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204203 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204205 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204207 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204209 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204212 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204213 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204216 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204218 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204222 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204220 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204221 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204527 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204528 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204531 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204533 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204534 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204536 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.204537 R-6 0.993232642261 E-1 0.999992903782 No_Uniprotmatch No_Description None
other nr_hits NA
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