#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

Search by gene name


Search by NvERTx ID





Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.113421 R-7 0.574337913716 E-1 0.999999161251 Q02978 Mitochondrial 2-oxoglutarate/malate carrier protein gi|156403117|ref|XP_001639936.1|predicted protein [Nematostella vectensis], 3e-172
other nr_hits gi|999980620|gb|KXJ19794.1|Mitochondrial 2-oxoglutarate/malate carrier protein [Exaiptasia pallida] 4e-141; gi|1005446468|ref|XP_015760525.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein-like isoform X2 [Acropora digitifera] 7e-133; gi|1005446466|ref|XP_015760524.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein-like isoform X1 [Acropora digitifera] 8e-129; gi|699237719|ref|XP_009862380.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein [Ciona intestinalis] 7e-121; gi|148225841|ref|NP_001085186.1|uncharacterized protein LOC432270 [Xenopus laevis] 5e-119; gi|488510391|ref|XP_004447283.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein [Dasypus novemcinctus] 2e-118; gi|558123520|ref|XP_006114705.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein [Pelodiscus sinensis] 5e-118; gi|955523281|ref|XP_014645122.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein [Ceratotherium simum simum] 2e-117; gi|147905724|ref|NP_001090497.1|solute carrier family 25 member 11 [Xenopus laevis] 2e-117;
NvERTx.4.113422 R-7 0.574337913716 E-1 0.999999161251 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.113423 R-7 0.574337913716 E-1 0.999999161251 Q02978 Mitochondrial 2-oxoglutarate/malate carrier protein gi|156403117|ref|XP_001639936.1|predicted protein [Nematostella vectensis], 3e-172
other nr_hits gi|999980620|gb|KXJ19794.1|Mitochondrial 2-oxoglutarate/malate carrier protein [Exaiptasia pallida] 4e-141; gi|1005446468|ref|XP_015760525.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein-like isoform X2 [Acropora digitifera] 7e-133; gi|1005446466|ref|XP_015760524.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein-like isoform X1 [Acropora digitifera] 8e-129; gi|699237719|ref|XP_009862380.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein [Ciona intestinalis] 7e-121; gi|148225841|ref|NP_001085186.1|uncharacterized protein LOC432270 [Xenopus laevis] 5e-119; gi|488510391|ref|XP_004447283.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein [Dasypus novemcinctus] 2e-118; gi|558123520|ref|XP_006114705.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein [Pelodiscus sinensis] 5e-118; gi|955523281|ref|XP_014645122.1|PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein [Ceratotherium simum simum] 2e-117; gi|147905724|ref|NP_001090497.1|solute carrier family 25 member 11 [Xenopus laevis] 2e-117;
NvERTx.4.215385 R-7 0.574337913716 E-1 0.999999161251 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158546 R-5 0.782000705538 E-1 0.999999161192 Q8BW96 Calcium/calmodulin-dependent protein kinase type 1D gi|156370112|ref|XP_001628316.1|predicted protein [Nematostella vectensis], 6e-145
other nr_hits gi|999973332|gb|KXJ12506.1|Calcium/calmodulin-dependent protein kinase type 1D [Exaiptasia pallida] 7e-125; gi|1042316804|ref|XP_017305829.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like [Ictalurus punctatus] 7e-114; gi|1049211281|ref|XP_017567647.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Pygocentrus nattereri] 1e-113; gi|1049211283|ref|XP_017567655.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X2 [Pygocentrus nattereri] 1e-113; gi|1049211285|ref|XP_017567664.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X3 [Pygocentrus nattereri] 1e-113; gi|583978286|ref|XP_006784486.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Neolamprologus brichardi] 1e-113; gi|583978290|ref|XP_006784488.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X3 [Neolamprologus brichardi] 1e-113; gi|583978292|ref|XP_006784489.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X4 [Neolamprologus brichardi] 1e-113; gi|548545174|ref|XP_005754044.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Pundamilia nyererei] 1e-113;
NvERTx.4.158547 R-5 0.782000705538 E-1 0.999999161192 Q8BW96 Calcium/calmodulin-dependent protein kinase type 1D gi|156370112|ref|XP_001628316.1|predicted protein [Nematostella vectensis], 7e-163
other nr_hits gi|999973332|gb|KXJ12506.1|Calcium/calmodulin-dependent protein kinase type 1D [Exaiptasia pallida] 1e-147; gi|1042316804|ref|XP_017305829.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like [Ictalurus punctatus] 2e-128; gi|1049211281|ref|XP_017567647.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Pygocentrus nattereri] 2e-128; gi|1049211283|ref|XP_017567655.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X2 [Pygocentrus nattereri] 2e-128; gi|1049211285|ref|XP_017567664.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X3 [Pygocentrus nattereri] 2e-128; gi|683915171|ref|XP_009089371.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1 [Serinus canaria] 2e-128; gi|583978286|ref|XP_006784486.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Neolamprologus brichardi] 3e-128; gi|583978290|ref|XP_006784488.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X3 [Neolamprologus brichardi] 3e-128; gi|583978292|ref|XP_006784489.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X4 [Neolamprologus brichardi] 3e-128;
NvERTx.4.158548 R-5 0.782000705538 E-1 0.999999161192 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158549 R-5 0.782000705538 E-1 0.999999161192 Q8BW96 Calcium/calmodulin-dependent protein kinase type 1D gi|156370112|ref|XP_001628316.1|predicted protein [Nematostella vectensis], 4e-39
other nr_hits gi|999973332|gb|KXJ12506.1|Calcium/calmodulin-dependent protein kinase type 1D [Exaiptasia pallida] 3e-31; gi|512830752|ref|XP_002935295.2|PREDICTED: calcium/calmodulin-dependent protein kinase type 1D [Xenopus tropicalis] 4e-28; gi|148229212|ref|NP_001084190.1|calcium/calmodulin dependent protein kinase ID S homeolog [Xenopus laevis] 4e-28; gi|1050385036|gb|OCT87230.1|hypothetical protein XELAEV_18020928mg [Xenopus laevis] 1e-27; gi|147901705|ref|NP_001086095.1|MGC82022 protein [Xenopus laevis] 1e-27; gi|573891314|ref|XP_006633415.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1D isoform X1 [Lepisosteus oculatus] 2e-27; gi|1121826286|ref|XP_019512534.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1D [Hipposideros armiger] 2e-27; gi|1044359833|ref|XP_017385345.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1D isoform X1 [Cebus capucinus imitator] 2e-27; gi|1044359837|ref|XP_017385347.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1D isoform X3 [Cebus capucinus imitator] 2e-27;
NvERTx.4.158550 R-5 0.782000705538 E-1 0.999999161192 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158551 R-5 0.782000705538 E-1 0.999999161192 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158552 R-5 0.782000705538 E-1 0.999999161192 Q8BW96 Calcium/calmodulin-dependent protein kinase type 1D gi|156370112|ref|XP_001628316.1|predicted protein [Nematostella vectensis], 6e-145
other nr_hits gi|999973332|gb|KXJ12506.1|Calcium/calmodulin-dependent protein kinase type 1D [Exaiptasia pallida] 7e-125; gi|1042316804|ref|XP_017305829.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like [Ictalurus punctatus] 7e-114; gi|1049211281|ref|XP_017567647.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Pygocentrus nattereri] 1e-113; gi|1049211283|ref|XP_017567655.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X2 [Pygocentrus nattereri] 1e-113; gi|1049211285|ref|XP_017567664.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X3 [Pygocentrus nattereri] 1e-113; gi|583978286|ref|XP_006784486.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Neolamprologus brichardi] 1e-113; gi|583978290|ref|XP_006784488.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X3 [Neolamprologus brichardi] 1e-113; gi|583978292|ref|XP_006784489.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X4 [Neolamprologus brichardi] 1e-113; gi|548545174|ref|XP_005754044.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Pundamilia nyererei] 1e-113;
NvERTx.4.158553 R-5 0.782000705538 E-1 0.999999161192 Q8BW96 Calcium/calmodulin-dependent protein kinase type 1D gi|156370112|ref|XP_001628316.1|predicted protein [Nematostella vectensis], 6e-163
other nr_hits gi|999973332|gb|KXJ12506.1|Calcium/calmodulin-dependent protein kinase type 1D [Exaiptasia pallida] 1e-147; gi|1042316804|ref|XP_017305829.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like [Ictalurus punctatus] 1e-128; gi|1049211281|ref|XP_017567647.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Pygocentrus nattereri] 2e-128; gi|1049211283|ref|XP_017567655.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X2 [Pygocentrus nattereri] 2e-128; gi|1049211285|ref|XP_017567664.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X3 [Pygocentrus nattereri] 2e-128; gi|683915171|ref|XP_009089371.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1 [Serinus canaria] 2e-128; gi|583978286|ref|XP_006784486.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X1 [Neolamprologus brichardi] 2e-128; gi|583978290|ref|XP_006784488.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X3 [Neolamprologus brichardi] 2e-128; gi|583978292|ref|XP_006784489.1|PREDICTED: calcium/calmodulin-dependent protein kinase type 1-like isoform X4 [Neolamprologus brichardi] 2e-128;
NvERTx.4.114655 R-7 0.697950014159 E-1 0.999999155817 B3P3E8 Leucine-rich repeat protein soc-2 homolog gi|156375467|ref|XP_001630102.1|predicted protein [Nematostella vectensis], 6e-217
other nr_hits gi|999987728|gb|KXJ26839.1|Protein LAP2 [Exaiptasia pallida] 2e-150; gi|1126163550|ref|XP_019641946.1|PREDICTED: leucine-rich repeat and IQ domain-containing protein 4-like isoform X2 [Branchiostoma belcheri] 8e-102; gi|1126163548|ref|XP_019641938.1|PREDICTED: leucine-rich repeat-containing protein 1-like isoform X1 [Branchiostoma belcheri] 3e-99; gi|828204218|ref|XP_012556195.1|PREDICTED: leucine-rich repeat protein lrrA-like [Hydra vulgaris] 3e-99; gi|260819403|ref|XP_002605026.1|hypothetical protein BRAFLDRAFT_124131 [Branchiostoma floridae] 2e-96; gi|762106080|ref|XP_011435622.1|PREDICTED: leucine-rich repeat and IQ domain-containing protein 4 [Crassostrea gigas] 5e-94; gi|260809195|ref|XP_002599392.1|hypothetical protein BRAFLDRAFT_64248 [Branchiostoma floridae] 1e-93; gi|919006866|ref|XP_013388431.1|PREDICTED: leucine-rich repeat protein SHOC-2-like [Lingula anatina] 3e-92; gi|443689982|gb|ELT92244.1|hypothetical protein CAPTEDRAFT_174612, partial [Capitella teleta] 1e-90;
NvERTx.4.114656 R-7 0.697950014159 E-1 0.999999155817 B3P3E8 Leucine-rich repeat protein soc-2 homolog gi|156375467|ref|XP_001630102.1|predicted protein [Nematostella vectensis], 6e-217
other nr_hits gi|999987728|gb|KXJ26839.1|Protein LAP2 [Exaiptasia pallida] 5e-150; gi|1126163550|ref|XP_019641946.1|PREDICTED: leucine-rich repeat and IQ domain-containing protein 4-like isoform X2 [Branchiostoma belcheri] 8e-102; gi|1126163548|ref|XP_019641938.1|PREDICTED: leucine-rich repeat-containing protein 1-like isoform X1 [Branchiostoma belcheri] 3e-99; gi|828204218|ref|XP_012556195.1|PREDICTED: leucine-rich repeat protein lrrA-like [Hydra vulgaris] 4e-99; gi|260819403|ref|XP_002605026.1|hypothetical protein BRAFLDRAFT_124131 [Branchiostoma floridae] 5e-96; gi|762106080|ref|XP_011435622.1|PREDICTED: leucine-rich repeat and IQ domain-containing protein 4 [Crassostrea gigas] 8e-94; gi|260809195|ref|XP_002599392.1|hypothetical protein BRAFLDRAFT_64248 [Branchiostoma floridae] 1e-93; gi|919006866|ref|XP_013388431.1|PREDICTED: leucine-rich repeat protein SHOC-2-like [Lingula anatina] 7e-92; gi|443689982|gb|ELT92244.1|hypothetical protein CAPTEDRAFT_174612, partial [Capitella teleta] 1e-90;
NvERTx.4.97764 R-6 0.936536543569 E-1 0.999999151656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97765 R-6 0.936536543569 E-1 0.999999151656 No_Uniprotmatch No_Description gi|156392086|ref|XP_001635880.1|predicted protein [Nematostella vectensis], 2e-91
other nr_hits gi|999968050|gb|KXJ07224.1|hypothetical protein AC249_AIPGENE26292 [Exaiptasia pallida] 2e-08;
NvERTx.4.97766 R-6 0.936536543569 E-1 0.999999151656 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.97767 R-6 0.936536543569 E-1 0.999999151656 No_Uniprotmatch No_Description gi|156392086|ref|XP_001635880.1|predicted protein [Nematostella vectensis], 1e-06
other nr_hits NA
NvERTx.4.97768 R-6 0.936536543569 E-1 0.999999151656 O62646 Synaptophysin-like protein 2 gi|156392086|ref|XP_001635880.1|predicted protein [Nematostella vectensis], 2e-110
other nr_hits gi|999968050|gb|KXJ07224.1|hypothetical protein AC249_AIPGENE26292 [Exaiptasia pallida] 3e-23;
NvERTx.4.97769 R-6 0.936536543569 E-1 0.999999151656 O62646 Synaptophysin-like protein 2 gi|156392086|ref|XP_001635880.1|predicted protein [Nematostella vectensis], 2e-110
other nr_hits gi|999968050|gb|KXJ07224.1|hypothetical protein AC249_AIPGENE26292 [Exaiptasia pallida] 3e-23;
NvERTx.4.97770 R-6 0.936536543569 E-1 0.999999151656 No_Uniprotmatch No_Description gi|156392086|ref|XP_001635880.1|predicted protein [Nematostella vectensis], 2e-91
other nr_hits gi|999968050|gb|KXJ07224.1|hypothetical protein AC249_AIPGENE26292 [Exaiptasia pallida] 2e-08;
NvERTx.4.232164 R-6 0.998875237981 E-1 0.99999914057 NA NA None
other nr_hits NA
NvERTx.4.11006 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.24276 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.28158 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.30744 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.47007 R-6 0.998875237981 E-1 0.99999914057 Q54D84 Trishanku gi|156381416|ref|XP_001632261.1|predicted protein [Nematostella vectensis], 7e-211
other nr_hits gi|999979574|gb|KXJ18748.1|Alpha-1A adrenergic receptor [Exaiptasia pallida] 2e-126; gi|1005441839|ref|XP_015758244.1|PREDICTED: uncharacterized protein LOC107337557 [Acropora digitifera] 4e-106; gi|1126208430|ref|XP_019637877.1|PREDICTED: kelch-like protein 21 isoform X3 [Branchiostoma belcheri] 4e-06; gi|698806054|ref|XP_009836056.1|hypothetical protein H257_10990 [Aphanomyces astaci] 4e-06; gi|1091434975|gb|OHT15542.1|hypothetical protein TRFO_02876 [Tritrichomonas foetus] 6e-06; gi|591365329|ref|XP_007057533.1|PREDICTED: speckle-type POZ protein-like isoform X1 [Chelonia mydas] 7e-06; gi|591365331|ref|XP_007057534.1|PREDICTED: speckle-type POZ protein-like isoform X2 [Chelonia mydas] 7e-06; gi|465989180|gb|EMP37947.1|Speckle-type POZ protein-like protein [Chelonia mydas] 7e-06; gi|1126208426|ref|XP_019637875.1|PREDICTED: kelch-like protein 21 isoform X1 [Branchiostoma belcheri] 1e-05;
NvERTx.4.57978 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.57979 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.100469 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101146 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101147 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101148 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.101149 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.106397 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111692 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121201 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121202 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121203 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.121207 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124755 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124756 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.126907 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140347 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.140348 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144291 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144917 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.152918 R-6 0.998875237981 E-1 0.99999914057 NA NA None
other nr_hits NA
NvERTx.4.175707 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.188535 R-6 0.998875237981 E-1 0.99999914057 No_Uniprotmatch No_Description None
other nr_hits NA
More