#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.181545 R-8 0.999584491813 E-1 0.999999697157 Q5RCV1 Transmembrane protein 104 gi|156368223|ref|XP_001627595.1|predicted protein [Nematostella vectensis], 8e-136
other nr_hits gi|999975781|gb|KXJ14955.1|Transmembrane protein 104 [Exaiptasia pallida] 6e-90; gi|1005450614|ref|XP_015762508.1|PREDICTED: transmembrane protein 104-like [Acropora digitifera] 4e-84; gi|585651396|ref|XP_006814738.1|PREDICTED: transmembrane protein 104-like [Saccoglossus kowalevskii] 9e-78; gi|919102338|ref|XP_013387563.1|PREDICTED: transmembrane protein 104-like isoform X3 [Lingula anatina] 3e-75; gi|919102334|ref|XP_013387561.1|PREDICTED: transmembrane protein 104-like isoform X1 [Lingula anatina] 3e-75; gi|919102336|ref|XP_013387562.1|PREDICTED: transmembrane protein 104-like isoform X2 [Lingula anatina] 3e-75; gi|1126215859|ref|XP_019641908.1|PREDICTED: transmembrane protein 104-like isoform X1 [Branchiostoma belcheri] 8e-74; gi|1126215861|ref|XP_019641909.1|PREDICTED: transmembrane protein 104-like isoform X2 [Branchiostoma belcheri] 8e-74; gi|1126215863|ref|XP_019641910.1|PREDICTED: transmembrane protein 104-like isoform X3 [Branchiostoma belcheri] 8e-74;
NvERTx.4.181546 R-8 0.999584491813 E-1 0.999999697157 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139140 R-5 0.9999710019 E-1 0.999999697027 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.139116 R-5 0.9999710019 E-1 0.999999697027 Q640F2 SHC SH2 domain-binding protein 1 homolog B gi|156372617|ref|XP_001629133.1|predicted protein [Nematostella vectensis], 4e-101
other nr_hits gi|1005421155|ref|XP_015760394.1|PREDICTED: SHC SH2 domain-binding protein 1 homolog B-like isoform X1 [Acropora digitifera] 9e-54; gi|1005421159|ref|XP_015760406.1|PREDICTED: SHC SH2 domain-binding protein 1-like isoform X2 [Acropora digitifera] 9e-54; gi|999978673|gb|KXJ17847.1|SHC SH2 domain-binding protein 1-like B [Exaiptasia pallida] 5e-45; gi|719733969|ref|XP_010221027.1|PREDICTED: SHC SH2 domain-binding protein 1 [Tinamus guttatus] 7e-35; gi|697412270|gb|KGL73295.1|SHC SH2 domain-binding protein 1, partial [Tinamus guttatus] 7e-35; gi|926495980|ref|XP_013796662.1|PREDICTED: SHC SH2 domain-binding protein 1 [Apteryx australis mantelli] 6e-34; gi|697493160|ref|XP_009676717.1|PREDICTED: SHC SH2 domain-binding protein 1 [Struthio camelus australis] 6e-34; gi|678216126|gb|KFV83105.1|SHC SH2 domain-binding protein 1, partial [Struthio camelus australis] 6e-34; gi|902906853|ref|XP_013042274.1|PREDICTED: SHC SH2 domain-binding protein 1, partial [Anser cygnoides domesticus] 8e-34;
NvERTx.4.139117 R-5 0.9999710019 E-1 0.999999697027 Q640F2 SHC SH2 domain-binding protein 1 homolog B gi|156372617|ref|XP_001629133.1|predicted protein [Nematostella vectensis], 4e-101
other nr_hits gi|1005421155|ref|XP_015760394.1|PREDICTED: SHC SH2 domain-binding protein 1 homolog B-like isoform X1 [Acropora digitifera] 9e-54; gi|1005421159|ref|XP_015760406.1|PREDICTED: SHC SH2 domain-binding protein 1-like isoform X2 [Acropora digitifera] 9e-54; gi|999978673|gb|KXJ17847.1|SHC SH2 domain-binding protein 1-like B [Exaiptasia pallida] 5e-45; gi|719733969|ref|XP_010221027.1|PREDICTED: SHC SH2 domain-binding protein 1 [Tinamus guttatus] 7e-35; gi|697412270|gb|KGL73295.1|SHC SH2 domain-binding protein 1, partial [Tinamus guttatus] 7e-35; gi|926495980|ref|XP_013796662.1|PREDICTED: SHC SH2 domain-binding protein 1 [Apteryx australis mantelli] 6e-34; gi|697493160|ref|XP_009676717.1|PREDICTED: SHC SH2 domain-binding protein 1 [Struthio camelus australis] 6e-34; gi|678216126|gb|KFV83105.1|SHC SH2 domain-binding protein 1, partial [Struthio camelus australis] 6e-34; gi|902906853|ref|XP_013042274.1|PREDICTED: SHC SH2 domain-binding protein 1, partial [Anser cygnoides domesticus] 8e-34;
NvERTx.4.139118 R-5 0.9999710019 E-1 0.999999697027 Q640F2 SHC SH2 domain-binding protein 1 homolog B gi|156372617|ref|XP_001629133.1|predicted protein [Nematostella vectensis], 3e-291
other nr_hits gi|999978673|gb|KXJ17847.1|SHC SH2 domain-binding protein 1-like B [Exaiptasia pallida] 2e-146; gi|1005421155|ref|XP_015760394.1|PREDICTED: SHC SH2 domain-binding protein 1 homolog B-like isoform X1 [Acropora digitifera] 4e-123; gi|1005421159|ref|XP_015760406.1|PREDICTED: SHC SH2 domain-binding protein 1-like isoform X2 [Acropora digitifera] 2e-116; gi|1005421161|ref|XP_015760412.1|PREDICTED: SHC SH2 domain-binding protein 1-like isoform X3 [Acropora digitifera] 3e-99; gi|874486390|ref|XP_012959321.1|PREDICTED: SHC SH2 domain-binding protein 1 [Anas platyrhynchos] 2e-69; gi|719733969|ref|XP_010221027.1|PREDICTED: SHC SH2 domain-binding protein 1 [Tinamus guttatus] 1e-68; gi|697412270|gb|KGL73295.1|SHC SH2 domain-binding protein 1, partial [Tinamus guttatus] 1e-68; gi|611976912|ref|XP_007474877.1|PREDICTED: SHC SH2 domain-binding protein 1 [Monodelphis domestica] 3e-68; gi|902906853|ref|XP_013042274.1|PREDICTED: SHC SH2 domain-binding protein 1, partial [Anser cygnoides domesticus] 4e-68;
NvERTx.4.216232 R-5 0.9999710019 E-1 0.999999697027 No_Uniprotmatch No_Description gi|156372617|ref|XP_001629133.1|predicted protein [Nematostella vectensis], 4e-54
other nr_hits gi|999978673|gb|KXJ17847.1|SHC SH2 domain-binding protein 1-like B [Exaiptasia pallida] 1e-26; gi|999978688|gb|KXJ17862.1|SHC SH2 domain-binding protein 1 [Exaiptasia pallida] 1e-26; gi|1005421155|ref|XP_015760394.1|PREDICTED: SHC SH2 domain-binding protein 1 homolog B-like isoform X1 [Acropora digitifera] 2e-05; gi|1005421161|ref|XP_015760412.1|PREDICTED: SHC SH2 domain-binding protein 1-like isoform X3 [Acropora digitifera] 2e-05;
NvERTx.4.232777 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.26915 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.28251 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.41022 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.73986 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.81839 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.81840 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85874 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.85875 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.86928 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.90133 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.104697 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.104698 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.105669 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.111775 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.117667 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.117669 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description gi|1005446155|ref|XP_015760377.1|PREDICTED: uncharacterized protein LOC107339570 [Acropora digitifera], 9e-10
other nr_hits gi|1005429221|ref|XP_015752345.1|PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Acropora digitifera] 9e-10;
NvERTx.4.3666 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125620 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125621 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.127119 R-9 0.823991093385 E-1 0.999999695562 Q2PZL6 Protocadherin Fat 4 gi|1005437721|ref|XP_015756293.1|PREDICTED: uncharacterized protein LOC107335775 [Acropora digitifera], 8e-15
other nr_hits gi|1005478234|ref|XP_015775853.1|PREDICTED: scavenger receptor cysteine-rich domain superfamily protein-like [Acropora digitifera] 3e-08; gi|1137494285|ref|XP_019901917.1|PREDICTED: neurogenic locus notch homolog protein 2 [Esox lucius] 3e-05; gi|999990615|gb|KXJ29637.1|Low-density lipoprotein receptor-related protein 6 [Exaiptasia pallida] 3e-05;
NvERTx.4.127120 R-9 0.823991093385 E-1 0.999999695562 Q2PZL6 Protocadherin Fat 4 gi|1005437721|ref|XP_015756293.1|PREDICTED: uncharacterized protein LOC107335775 [Acropora digitifera], 8e-15
other nr_hits gi|1005478234|ref|XP_015775853.1|PREDICTED: scavenger receptor cysteine-rich domain superfamily protein-like [Acropora digitifera] 3e-08; gi|1137494285|ref|XP_019901917.1|PREDICTED: neurogenic locus notch homolog protein 2 [Esox lucius] 2e-05; gi|999990615|gb|KXJ29637.1|Low-density lipoprotein receptor-related protein 6 [Exaiptasia pallida] 2e-05;
NvERTx.4.128118 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.136590 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146038 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.146039 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.158158 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.164937 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.164940 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.176258 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.184317 R-9 0.823991093385 E-1 0.999999695562 Q54RA4 Probable iron/ascorbate oxidoreductase DDB_G0283291 gi|156405840|ref|XP_001640939.1|predicted protein [Nematostella vectensis], 9e-186
other nr_hits gi|999988316|gb|KXJ27410.1|putative iron/ascorbate oxidoreductase [Exaiptasia pallida] 2e-69; gi|999976822|gb|KXJ15996.1|1-aminocyclopropane-1-carboxylate oxidase [Exaiptasia pallida] 4e-50; gi|999971025|gb|KXJ10199.1|1-aminocyclopropane-1-carboxylate oxidase [Exaiptasia pallida] 4e-50; gi|651617749|ref|WP_026611865.1|iron oxidase [Methylocaldum szegediense] 1e-48; gi|470524530|ref|XP_004356493.1|oxidoreductase [Acanthamoeba castellanii str. Neff] 2e-48; gi|738025497|ref|WP_035984482.1|iron oxidase [Leptolyngbya sp. KIOST-1] 4e-48; gi|1149172766|ref|WP_077730620.1|iron oxidase [Methylocaldum sp. 14B] 5e-48; gi|1125566436|gb|OLE75112.1|iron oxidase [Acidobacteria bacterium 13_1_20CM_2_57_8] 3e-46; gi|737193732|ref|WP_035179368.1|hypothetical protein [Acidocella facilis] 5e-46;
NvERTx.4.184319 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.186812 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192034 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.192035 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.193447 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203357 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.207484 R-9 0.823991093385 E-1 0.999999695562 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.209253 R-9 0.823991093385 E-1 0.999999695562 NA NA None
other nr_hits NA
NvERTx.4.120685 R-5 0.969078506974 E-1 0.999999687452 Q569C3 Ubiquitin carboxyl-terminal hydrolase 1 gi|999981310|gb|KXJ20484.1|Ubiquitin carboxyl-terminal hydrolase 1 [Exaiptasia pallida], 1e-95
other nr_hits gi|1005450403|ref|XP_015762397.1|PREDICTED: ubiquitin carboxyl-terminal hydrolase 1-like [Acropora digitifera] 4e-88; gi|989989075|ref|XP_015450615.1|PREDICTED: ubiquitin carboxyl-terminal hydrolase 1 isoform X2 [Pteropus alecto] 4e-50; gi|961734695|ref|XP_014927807.1|PREDICTED: ubiquitin carboxyl-terminal hydrolase 1 isoform X2 [Acinonyx jubatus] 7e-50; gi|591328016|ref|XP_007089926.1|PREDICTED: ubiquitin carboxyl-terminal hydrolase 1 isoform X2 [Panthera tigris altaica] 7e-50; gi|958744382|ref|XP_014710183.1|PREDICTED: ubiquitin carboxyl-terminal hydrolase 1 isoform X2 [Equus asinus] 9e-50; gi|759147371|ref|XP_011367853.1|PREDICTED: ubiquitin carboxyl-terminal hydrolase 1 isoform X2 [Pteropus vampyrus] 3e-49; gi|545498611|ref|XP_005620281.1|PREDICTED: ubiquitin carboxyl-terminal hydrolase 1 isoform X2 [Canis lupus familiaris] 7e-49; gi|156365797|ref|XP_001626829.1|predicted protein [Nematostella vectensis] 5e-44; gi|939307442|ref|XP_014268867.1|PREDICTED: ubiquitin carboxyl-terminal hydrolase 1 isoform X1 [Maylandia zebra] 1e-39;
NvERTx.4.44084 R-7 0.981963078829 E-1 0.999999687428 Q5E9K3 Pyridoxine-5'-phosphate oxidase gi|156407430|ref|XP_001641547.1|predicted protein [Nematostella vectensis], 6e-129
other nr_hits gi|260823591|ref|XP_002606164.1|hypothetical protein BRAFLDRAFT_126490 [Branchiostoma floridae] 3e-75; gi|1126223393|ref|XP_019646004.1|PREDICTED: pyridoxine-5'-phosphate oxidase-like isoform X2 [Branchiostoma belcheri] 3e-74; gi|1126223391|ref|XP_019646003.1|PREDICTED: pyridoxine-5'-phosphate oxidase-like isoform X1 [Branchiostoma belcheri] 3e-74; gi|72014234|ref|XP_785156.1|PREDICTED: pyridoxine-5'-phosphate oxidase [Strongylocentrotus purpuratus] 6e-71; gi|908444924|ref|XP_013080306.1|PREDICTED: pyridoxine-5'-phosphate oxidase-like isoform X2 [Biomphalaria glabrata] 4e-69; gi|908444922|ref|XP_013080305.1|PREDICTED: pyridoxine-5'-phosphate oxidase-like isoform X1 [Biomphalaria glabrata] 5e-69; gi|1009537226|ref|XP_015905278.1|PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase-like isoform X1 [Parasteatoda tepidariorum] 6e-68; gi|1101357121|ref|XP_018904745.1|PREDICTED: pyridoxine-5'-phosphate oxidase-like [Bemisia tabaci] 8e-68; gi|524908064|ref|XP_005109140.1|PREDICTED: pyridoxine-5'-phosphate oxidase-like isoform X4 [Aplysia californica] 1e-67;
NvERTx.4.44085 R-7 0.981963078829 E-1 0.999999687428 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.98097 R-1 0.995457996499 E-1 0.999999682878 Q4QQS3 Protein OSCP1 gi|1005482529|ref|XP_015777954.1|PREDICTED: protein OSCP1-like [Acropora digitifera], 8e-40
other nr_hits gi|156362175|ref|XP_001625656.1|predicted protein [Nematostella vectensis] 6e-37; gi|919070597|ref|XP_013416760.1|PREDICTED: protein OSCP1-like [Lingula anatina] 5e-23; gi|1126220006|ref|XP_019644179.1|PREDICTED: protein OSCP1-like [Branchiostoma belcheri] 9e-23; gi|507655187|ref|XP_004705017.1|PREDICTED: protein OSCP1 isoform X1 [Echinops telfairi] 9e-23; gi|507655191|ref|XP_004705018.1|PREDICTED: protein OSCP1 isoform X2 [Echinops telfairi] 9e-23; gi|586474069|ref|XP_006867602.1|PREDICTED: protein OSCP1 isoform X1 [Chrysochloris asiatica] 2e-21; gi|586474071|ref|XP_006867603.1|PREDICTED: protein OSCP1 isoform X2 [Chrysochloris asiatica] 2e-21; gi|196006333|ref|XP_002113033.1|hypothetical protein TRIADDRAFT_50333 [Trichoplax adhaerens] 2e-21; gi|958693347|ref|XP_014695628.1|PREDICTED: protein OSCP1 [Equus asinus] 3e-21;
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