#-*- coding: utf-8 -*- NvERTx Embryo-Regen plotter

Embryogenesis and Regeneration Co-Expression Clusters

Using fuzzy c-means clustering, we regrouped temporal expression patterns during embryonic development as well as during oral regeneration of Nematostella vectensis. Clicking on a cluster will display all associated genes . Ticking a checkbox in the table then 'Compare!' will bring you to the results page of that transcript.

References for regeneration and novel embryonic datasets: Warner et al(a), 2017, Warner et al(b), 2017. Re-analyzed embryonic datasets: Fischer et al. 2014,Tulin et al. 2013,and Helm et al. 2013

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Explore Mfuzz Clusters

Cluster E-1

Cluster E-2

Cluster E-3

Cluster E-4

Cluster E-5

Cluster E-6

Cluster E-7

Cluster E-8

Mfuzz cluster

Details

click on a row to view the other nr hits

ID mfuzz regen clust mfuzz regen score mfuzz embryo clust mfuzz embryo score Uniprot ID Uniprot description top nr_hit eval
NvERTx.4.122483 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.122484 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description gi|156384962|ref|XP_001633401.1|predicted protein [Nematostella vectensis], 8e-07
other nr_hits NA
NvERTx.4.124373 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124384 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124394 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124395 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124387 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.124389 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.125386 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133719 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133749 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133750 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133752 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133753 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.133754 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.144697 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.156011 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181181 R-6 0.835156970566 E-1 0.999999903775 P20771 Uncharacterized protein in nthA 5'region gi|156375873|ref|XP_001630303.1|predicted protein [Nematostella vectensis], 1e-29
other nr_hits gi|156375871|ref|XP_001630302.1|predicted protein [Nematostella vectensis] 6e-28; gi|1126200712|ref|XP_019633685.1|PREDICTED: uncharacterized protein LOC109477081 [Branchiostoma belcheri] 2e-17; gi|260813967|ref|XP_002601687.1|hypothetical protein BRAFLDRAFT_94564 [Branchiostoma floridae] 4e-17; gi|999989272|gb|KXJ28314.1|Amidase [Exaiptasia pallida] 4e-16; gi|260813969|ref|XP_002601688.1|hypothetical protein BRAFLDRAFT_94568 [Branchiostoma floridae] 1e-15; gi|260813973|ref|XP_002601690.1|hypothetical protein BRAFLDRAFT_94570 [Branchiostoma floridae] 1e-14; gi|260813975|ref|XP_002601691.1|hypothetical protein BRAFLDRAFT_94571 [Branchiostoma floridae] 1e-14; gi|999989244|gb|KXJ28286.1|Amidase [Exaiptasia pallida] 4e-14; gi|999981997|gb|KXJ21151.1|Amidase [Exaiptasia pallida] 5e-14;
NvERTx.4.181182 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.181198 R-6 0.835156970566 E-1 0.999999903775 P95896 Amidase gi|156375871|ref|XP_001630302.1|predicted protein [Nematostella vectensis], 8e-166
other nr_hits gi|156375873|ref|XP_001630303.1|predicted protein [Nematostella vectensis] 2e-164; gi|999989244|gb|KXJ28286.1|Amidase [Exaiptasia pallida] 5e-114; gi|999989294|gb|KXJ28336.1|Amidase [Exaiptasia pallida] 4e-112; gi|999981997|gb|KXJ21151.1|Amidase [Exaiptasia pallida] 6e-102; gi|260813969|ref|XP_002601688.1|hypothetical protein BRAFLDRAFT_94568 [Branchiostoma floridae] 3e-97; gi|1126200323|ref|XP_019633473.1|PREDICTED: uncharacterized protein LOC109476898 [Branchiostoma belcheri] 3e-94; gi|1005284374|ref|WP_061579417.1|amidase [Parageobacillus caldoxylosilyticus] 4e-93; gi|1126200712|ref|XP_019633685.1|PREDICTED: uncharacterized protein LOC109477081 [Branchiostoma belcheri] 4e-91; gi|985489628|ref|WP_060788220.1|MULTISPECIES: amidase [Geobacillus] 5e-91;
NvERTx.4.181199 R-6 0.835156970566 E-1 0.999999903775 A0A1H6XVE3_9BURK Amidase {ECO:0000313|EMBL:SEJ33013.1} gi|156375873|ref|XP_001630303.1|predicted protein [Nematostella vectensis], 2e-22
other nr_hits gi|156375871|ref|XP_001630302.1|predicted protein [Nematostella vectensis] 2e-18; gi|999989272|gb|KXJ28314.1|Amidase [Exaiptasia pallida] 5e-11; gi|999989244|gb|KXJ28286.1|Amidase [Exaiptasia pallida] 1e-10; gi|999981997|gb|KXJ21151.1|Amidase [Exaiptasia pallida] 1e-10; gi|999989294|gb|KXJ28336.1|Amidase [Exaiptasia pallida] 9e-10; gi|1005467417|ref|XP_015770631.1|PREDICTED: LOW QUALITY PROTEIN: amidase-like [Acropora digitifera] 1e-09; gi|1005451211|ref|XP_015762807.1|PREDICTED: amidase-like [Acropora digitifera] 2e-09; gi|1005478997|ref|XP_015776214.1|PREDICTED: amidase-like [Acropora digitifera] 2e-09; gi|1124704290|ref|WP_074982274.1|amidase [Paraburkholderia tropica] 6e-08;
NvERTx.4.181203 R-6 0.835156970566 E-1 0.999999903775 P95896 Amidase gi|156375871|ref|XP_001630302.1|predicted protein [Nematostella vectensis], 3e-256
other nr_hits gi|156375873|ref|XP_001630303.1|predicted protein [Nematostella vectensis] 2e-230; gi|999989244|gb|KXJ28286.1|Amidase [Exaiptasia pallida] 2e-160; gi|999989294|gb|KXJ28336.1|Amidase [Exaiptasia pallida] 6e-159; gi|999981997|gb|KXJ21151.1|Amidase [Exaiptasia pallida] 6e-147; gi|260813969|ref|XP_002601688.1|hypothetical protein BRAFLDRAFT_94568 [Branchiostoma floridae] 2e-142; gi|1126200712|ref|XP_019633685.1|PREDICTED: uncharacterized protein LOC109477081 [Branchiostoma belcheri] 9e-140; gi|260813967|ref|XP_002601687.1|hypothetical protein BRAFLDRAFT_94564 [Branchiostoma floridae] 1e-139; gi|1005284374|ref|WP_061579417.1|amidase [Parageobacillus caldoxylosilyticus] 1e-131; gi|1126200323|ref|XP_019633473.1|PREDICTED: uncharacterized protein LOC109476898 [Branchiostoma belcheri] 1e-130;
NvERTx.4.181190 R-6 0.835156970566 E-1 0.999999903775 P27765 Amidase gi|156375873|ref|XP_001630303.1|predicted protein [Nematostella vectensis], 6e-46
other nr_hits gi|156375871|ref|XP_001630302.1|predicted protein [Nematostella vectensis] 3e-31; gi|999981997|gb|KXJ21151.1|Amidase [Exaiptasia pallida] 2e-16; gi|999989294|gb|KXJ28336.1|Amidase [Exaiptasia pallida] 2e-15; gi|999989272|gb|KXJ28314.1|Amidase [Exaiptasia pallida] 8e-15; gi|1005478997|ref|XP_015776214.1|PREDICTED: amidase-like [Acropora digitifera] 2e-13; gi|1005467417|ref|XP_015770631.1|PREDICTED: LOW QUALITY PROTEIN: amidase-like [Acropora digitifera] 2e-13; gi|260813967|ref|XP_002601687.1|hypothetical protein BRAFLDRAFT_94564 [Branchiostoma floridae] 9e-13; gi|585711079|ref|XP_006824673.1|PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial-like, partial [Saccoglossus kowalevskii] 3e-12; gi|1126200712|ref|XP_019633685.1|PREDICTED: uncharacterized protein LOC109477081 [Branchiostoma belcheri] 1e-11;
NvERTx.4.181192 R-6 0.835156970566 E-1 0.999999903775 P95896 Amidase gi|156375871|ref|XP_001630302.1|predicted protein [Nematostella vectensis], 2e-257
other nr_hits gi|156375873|ref|XP_001630303.1|predicted protein [Nematostella vectensis] 9e-223; gi|999989244|gb|KXJ28286.1|Amidase [Exaiptasia pallida] 9e-161; gi|999989294|gb|KXJ28336.1|Amidase [Exaiptasia pallida] 1e-159; gi|999981997|gb|KXJ21151.1|Amidase [Exaiptasia pallida] 6e-147; gi|260813969|ref|XP_002601688.1|hypothetical protein BRAFLDRAFT_94568 [Branchiostoma floridae] 2e-142; gi|260813967|ref|XP_002601687.1|hypothetical protein BRAFLDRAFT_94564 [Branchiostoma floridae] 5e-140; gi|1126200712|ref|XP_019633685.1|PREDICTED: uncharacterized protein LOC109477081 [Branchiostoma belcheri] 2e-139; gi|1005284374|ref|WP_061579417.1|amidase [Parageobacillus caldoxylosilyticus] 2e-131; gi|919022493|ref|XP_013395130.1|PREDICTED: amidase-like [Lingula anatina] 3e-131;
NvERTx.4.181195 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description gi|156331129|ref|XP_001619149.1|hypothetical protein NEMVEDRAFT_v1g152234 [Nematostella vectensis], 2e-05
other nr_hits NA
NvERTx.4.181197 R-6 0.835156970566 E-1 0.999999903775 P95896 Amidase gi|156375873|ref|XP_001630303.1|predicted protein [Nematostella vectensis], 3e-78
other nr_hits gi|156375871|ref|XP_001630302.1|predicted protein [Nematostella vectensis] 3e-70; gi|999989244|gb|KXJ28286.1|Amidase [Exaiptasia pallida] 1e-55; gi|999989294|gb|KXJ28336.1|Amidase [Exaiptasia pallida] 1e-54; gi|762107341|ref|XP_011436270.1|PREDICTED: uncharacterized protein LOC105334489 isoform X1 [Crassostrea gigas] 4e-50; gi|762107343|ref|XP_011436271.1|PREDICTED: uncharacterized protein LOC105334489 isoform X2 [Crassostrea gigas] 4e-50; gi|405970885|gb|EKC35752.1|Amidase [Crassostrea gigas] 4e-50; gi|919022426|ref|XP_013395092.1|PREDICTED: amidase-like [Lingula anatina] 6e-49; gi|919022424|ref|XP_013395091.1|PREDICTED: amidase-like [Lingula anatina] 8e-49; gi|1005284374|ref|WP_061579417.1|amidase [Parageobacillus caldoxylosilyticus] 1e-48;
NvERTx.4.202808 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202815 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202819 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202825 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202809 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202823 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202824 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202810 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202811 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202813 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202817 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202820 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.202827 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203059 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203060 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203077 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203078 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203079 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203069 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.203070 R-6 0.835156970566 E-1 0.999999903775 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.171532 R-4 0.490068438419 E-1 0.999999902913 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173657 R-4 0.490068438419 E-1 0.999999902913 P15535 Beta-1,4-galactosyltransferase 1 gi|156405928|ref|XP_001640983.1|predicted protein [Nematostella vectensis], 3e-149
other nr_hits gi|999986523|gb|KXJ25658.1|Beta-1,4-galactosyltransferase 1 [Exaiptasia pallida] 6e-129; gi|449669504|ref|XP_002170237.2|PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Hydra vulgaris] 2e-93; gi|1008449039|ref|XP_015838177.1|PREDICTED: beta-1,4-galactosyltransferase 4 isoform X1 [Tribolium castaneum] 8e-75; gi|91088651|ref|XP_974484.1|PREDICTED: beta-1,4-galactosyltransferase 4 isoform X2 [Tribolium castaneum] 8e-75; gi|939265483|ref|XP_014252790.1|PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Cimex lectularius] 1e-73; gi|1058035633|gb|JAS21478.1|hypothetical protein g.29998 [Clastoptera arizonana] 2e-73; gi|970884613|ref|XP_015126952.1|PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Diachasma alloeum] 4e-73; gi|1130225734|ref|XP_019758775.1|PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4 isoform X1 [Dendroctonus ponderosae] 6e-73; gi|1058149472|gb|JAS78384.1|hypothetical protein g.5860 [Homalodisca liturata] 1e-72;
NvERTx.4.173658 R-4 0.490068438419 E-1 0.999999902913 No_Uniprotmatch No_Description None
other nr_hits NA
NvERTx.4.173659 R-4 0.490068438419 E-1 0.999999902913 P15535 Beta-1,4-galactosyltransferase 1 gi|156405928|ref|XP_001640983.1|predicted protein [Nematostella vectensis], 2e-144
other nr_hits gi|999986523|gb|KXJ25658.1|Beta-1,4-galactosyltransferase 1 [Exaiptasia pallida] 1e-130; gi|449669504|ref|XP_002170237.2|PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4-like [Hydra vulgaris] 9e-93; gi|1008449039|ref|XP_015838177.1|PREDICTED: beta-1,4-galactosyltransferase 4 isoform X1 [Tribolium castaneum] 5e-75; gi|91088651|ref|XP_974484.1|PREDICTED: beta-1,4-galactosyltransferase 4 isoform X2 [Tribolium castaneum] 5e-75; gi|1130225734|ref|XP_019758775.1|PREDICTED: beta-1,4-N-acetylgalactosaminyltransferase bre-4 isoform X1 [Dendroctonus ponderosae] 4e-73; gi|1058035633|gb|JAS21478.1|hypothetical protein g.29998 [Clastoptera arizonana] 5e-73; gi|1058149472|gb|JAS78384.1|hypothetical protein g.5860 [Homalodisca liturata] 2e-72; gi|1058093512|gb|JAS50415.1|hypothetical protein g.19993 [Cuerna arida] 2e-72; gi|1133411518|ref|XP_019880353.1|PREDICTED: LOW QUALITY PROTEIN: beta-1,4-N-acetylgalactosaminyltransferase bre-4 [Aethina tumida] 2e-72;
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